Evidence map›Paper›PMID 38928285›Full record

ArticleInternational journal of molecular sciences2024

Compensatory Modulation of Seed Storage Protein Synthesis and Alteration of Starch Accumulation by Selective Editing of 13 kDa Prolamin Genes by CRISPR-Cas9 in Rice.

Hue Anh Pham, Kyoungwon Cho, Anh Duc Tran, Deepanwita Chandra, Jinpyo So, Hanh Thi Thuy Nguyen, Hyunkyu Sang, Jong-Yeol Lee, Oksoo Han

Abstract read
In one paragraph

Article in International journal of molecular sciences, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Hue Anh PhamKumho Life Science Laboratory, Department of Integrative Food, Bioscience and Biotechnology, College of Agriculture and Life Sciences, Chonnam National University, Gwangju 61166, Republic of Korea.
Kyoungwon ChoKumho Life Science Laboratory, Department of Integrative Food, Bioscience and Biotechnology, College of Agriculture and Life Sciences, Chonnam National University, Gwangju 61166, Republic of Korea.ORCID 0000-0002-6329-2907
Anh Duc TranKumho Life Science Laboratory, Department of Integrative Food, Bioscience and Biotechnology, College of Agriculture and Life Sciences, Chonnam National University, Gwangju 61166, Republic of Korea.ORCID 0000-0001-9124-1552
Deepanwita ChandraKumho Life Science Laboratory, Department of Integrative Food, Bioscience and Biotechnology, College of Agriculture and Life Sciences, Chonnam National University, Gwangju 61166, Republic of Korea.
Jinpyo SoKumho Life Science Laboratory, Department of Integrative Food, Bioscience and Biotechnology, College of Agriculture and Life Sciences, Chonnam National University, Gwangju 61166, Republic of Korea.
Hanh Thi Thuy NguyenFaculty of Biotechnology, Vietnam National University of Agriculture, Hanoi 12406, Vietnam.ORCID 0000-0002-6851-3940
Hyunkyu SangKumho Life Science Laboratory, Department of Integrative Food, Bioscience and Biotechnology, College of Agriculture and Life Sciences, Chonnam National University, Gwangju 61166, Republic of Korea.ORCID 0000-0002-7459-5217
Jong-Yeol LeeDepartment of Agricultural Biotechnology, National Institute of Agricultural Science, RDA, Jeonju 54874, Republic of Korea.
Oksoo HanKumho Life Science Laboratory, Department of Integrative Food, Bioscience and Biotechnology, College of Agriculture and Life Sciences, Chonnam National University, Gwangju 61166, Republic of Korea.ORCID 0000-0002-2965-8119

Funding

Rural Development Administration, National Research Foundation of Republic of Korea PJ013149, RS-2023-00248217, 2023R1A2C1002936, 2024H1A7A2A02000017
6 · The paper itself

Abstract

Rice prolamins are categorized into three groups by molecular size (10, 13, or 16 kDa), while the 13 kDa prolamins are assigned to four subgroups (Pro13a-I, Pro13a-II, Pro13b-I, and Pro13b-II) based on cysteine residue content. Since lowering prolamin content in rice is essential to minimize indigestion and allergy risks, we generated four knockout lines using CRISPR-Cas9, which selectively reduced the expression of a specific subgroup of the 13 kDa prolamins. These four mutant rice lines also showed the compensatory expression of glutelins and non-targeted prolamins and were accompanied by low grain weight, altered starch content, and atypically-shaped starch granules and protein bodies. Transcriptome analysis identified 746 differentially expressed genes associated with 13 kDa prolamins during development. Correlation analysis revealed negative associations between genes in Pro13a-I and those in Pro13a-II and Pro13b-I/II subgroups. Furthermore, alterations in the transcription levels of 9 ER stress and 17 transcription factor genes were also observed in mutant rice lines with suppressed expression of 13 kDa prolamin. Our results provide profound insight into the functional role of 13 kDa rice prolamins in the regulatory mechanisms underlying rice seed development, suggesting their promising potential application to improve nutritional and immunological value.

Indexed as

CRISPR-Cas SystemsGene EditingGene Expression Regulation, PlantOryzaProlaminsStarchGene Expression ProfilingGlutensPlant ProteinsSeedsSeed Storage ProteinsGlutensPlant ProteinsProlaminsSeed Storage ProteinsStarch13 kDa prolaminCRISPR-Cas9differentially expressed genesER stressglutelinprolaminprotein bodyrice seedseed storage proteinstarch

Identifiers

PMID38928285
PMCPMC11204006

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.