Evidence map›Paper›PMID 38926709›Full record

ArticleBMC biology2024

Multi-genome comparisons reveal gain-and-loss evolution of anti-Mullerian hormone receptor type 2 as a candidate master sex-determining gene in Percidae.

Heiner Kuhl, Peter T Euclide, Christophe Klopp, Cédric Cabau, Margot Zahm, Céline Lopez-Roques, Carole Iampietro, Claire Kuchly, Cécile Donnadieu, Romain Feron and 22 more

Abstract read
In one paragraph

Article in BMC biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

32 authors.

Heiner KuhlLeibniz-Institute of Freshwater Ecology and Inland Fisheries - IGB (Forschungsverbund Berlin), Müggelseedamm 301/310, D-12587, Berlin, Germany. Heiner.Kuhl@igb-berlin.de.ORCID http://orcid.org/0000-0001-7623-9227
Peter T EuclideDepartment of Forestry and Natural Resources | Illinois-Indiana Sea Grant, Purdue University, West Lafayette, USA.ORCID http://orcid.org/0000-0002-1212-0435
Christophe KloppSigenae, Plateforme Bioinformatique, Genotoul, BioinfoMics, UR875 Biométrie et Intelligence Artificielle, INRAE, Castanet-Tolosan, France.ORCID http://orcid.org/0000-0001-7126-5477
Cédric CabauSigenae, GenPhySE, Université de Toulouse, INRAE, ENVT, Castanet-Tolosan, France.ORCID http://orcid.org/0000-0001-8560-4003
Margot ZahmSigenae, Plateforme Bioinformatique, Genotoul, BioinfoMics, UR875 Biométrie et Intelligence Artificielle, INRAE, Castanet-Tolosan, France.ORCID http://orcid.org/0000-0001-8632-0109
Céline Lopez-RoquesINRAE, US 1426, GeT-PlaGe, Genotoul, Castanet-Tolosan, France.ORCID http://orcid.org/0000-0003-2529-7958
Carole IampietroINRAE, US 1426, GeT-PlaGe, Genotoul, Castanet-Tolosan, France.ORCID http://orcid.org/0000-0002-8148-4785
Claire KuchlyINRAE, US 1426, GeT-PlaGe, Genotoul, Castanet-Tolosan, France.ORCID http://orcid.org/0000-0001-8994-550X
Cécile DonnadieuINRAE, US 1426, GeT-PlaGe, Genotoul, Castanet-Tolosan, France.ORCID http://orcid.org/0000-0002-5164-3095
Romain FeronDepartment of Ecology and Evolution, University of Lausanne, Lausanne, Switzerland.ORCID http://orcid.org/0000-0001-5893-6184
Hugues ParrinelloMontpellier GenomiX (MGX), c/o Institut de Génomique Fonctionnelle, 141 rue de la Cardonille, 34094, Montpellier Cedex 05, France.ORCID http://orcid.org/0000-0002-1151-001X
Charles PoncetGDEC Gentyane, INRAE, Université Clermont Auvergne, Clermont-Ferrand, France.ORCID http://orcid.org/0000-0003-3376-347X
Lydia JaffreloGDEC Gentyane, INRAE, Université Clermont Auvergne, Clermont-Ferrand, France.
Carole ConfolentGDEC Gentyane, INRAE, Université Clermont Auvergne, Clermont-Ferrand, France.
Ming WenINRAE, LPGP, 35000, Rennes, France.ORCID http://orcid.org/0000-0002-8710-3963
Amaury HerpinINRAE, LPGP, 35000, Rennes, France.ORCID http://orcid.org/0000-0002-0630-4027
Elodie JouannoINRAE, LPGP, 35000, Rennes, France.ORCID http://orcid.org/0000-0003-4840-1025
Anastasia BestinSYSAAF, Station INRAE-LPGP, Campus de Beaulieu, 35042, Rennes Cedex, France.ORCID http://orcid.org/0000-0002-1777-338X
Pierrick HaffraySYSAAF, Station INRAE-LPGP, Campus de Beaulieu, 35042, Rennes Cedex, France.ORCID http://orcid.org/0000-0001-8604-4562
Romain MorvezenSYSAAF, Station INRAE-LPGP, Campus de Beaulieu, 35042, Rennes Cedex, France.ORCID http://orcid.org/0000-0002-9773-9359
Taina Rocha de AlmeidaUniversity of Lorraine, INRAE, L2A, Nancy, France.ORCID http://orcid.org/0000-0003-0138-6833
Thomas LecocqUniversity of Lorraine, INRAE, L2A, Nancy, France.ORCID http://orcid.org/0000-0002-4947-0332
Bérénice SchaerlingerUniversity of Lorraine, INRAE, L2A, Nancy, France.ORCID http://orcid.org/0000-0002-7449-2752
Dominique ChardardUniversity of Lorraine, INRAE, L2A, Nancy, France.ORCID http://orcid.org/0000-0002-1782-575X
Daniel ŻarskiDepartment of Gamete and Embryo Biology, Institute of Animal Reproduction and Food Research, Polish Academy of Sciences, ul. Tuwima 10, 10-748, Olsztyn, Poland.ORCID http://orcid.org/0000-0003-3082-9250
Wesley A LarsonNational Oceanographic and Atmospheric Administration, National Marine Fisheries Service, Alaska Fisheries Science Center, 17109 Point Lena Loop Road, Auke Bay LaboratoriesJuneau, AK, 99801, USA.ORCID http://orcid.org/0000-0003-4473-3401
John H PostlethwaitInstitute of Neuroscience, University of Oregon, Eugene, OR, 97403, USA.ORCID http://orcid.org/0000-0002-5476-2137
Serik TimirkhanovSea Biology LLP, Almaty, Kazakhstan.ORCID http://orcid.org/0000-0001-6933-7515
Werner KloasLeibniz-Institute of Freshwater Ecology and Inland Fisheries - IGB (Forschungsverbund Berlin), Müggelseedamm 301/310, D-12587, Berlin, Germany.ORCID http://orcid.org/0000-0001-8905-183X
Sven WuertzLeibniz-Institute of Freshwater Ecology and Inland Fisheries - IGB (Forschungsverbund Berlin), Müggelseedamm 301/310, D-12587, Berlin, Germany.ORCID http://orcid.org/0000-0002-8190-2684
Matthias StöckLeibniz-Institute of Freshwater Ecology and Inland Fisheries - IGB (Forschungsverbund Berlin), Müggelseedamm 301/310, D-12587, Berlin, Germany.ORCID http://orcid.org/0000-0003-4888-8371
Yann GuiguenINRAE, LPGP, 35000, Rennes, France. yann.guiguen@inrae.fr.ORCID http://orcid.org/0000-0001-5464-6219

Funding

Mechanisms of Sex Determination in ZebrafishR35GM139635 · NIGMS · UNIVERSITY OF OREGON · PI POSTLETHWAIT, JOHN H. · 2021 to 2025
$1.9M
Agence Nationale de la Recherche ANR-10-INBS-09Agence Nationale de la Recherche ANR-13-ISV7-0005Deutsche Forschungsgemeinschaft KU 3596/1-1Deutsche Forschungsgemeinschaft project number: 324050651NIGMS NIH HHS R35 GM139635
6 · The paper itself

Abstract

backgroundThe Percidae family comprises many fish species of major importance for aquaculture and fisheries. Based on three new chromosome-scale assemblies in Perca fluviatilis, Perca schrenkii, and Sander vitreus along with additional percid fish reference genomes, we provide an evolutionary and comparative genomic analysis of their sex-determination systems.

resultsWe explored the fate of a duplicated anti-Mullerian hormone receptor type-2 gene (amhr2bY), previously suggested to be the master sex-determining (MSD) gene in P. flavescens. Phylogenetically related and structurally similar amhr2 duplicates (amhr2b) were found in P. schrenkii and Sander lucioperca, potentially dating this duplication event to their last common ancestor around 19-27 Mya. In P. fluviatilis and S. vitreus, this amhr2b duplicate has been likely lost while it was subject to amplification in S. lucioperca. Analyses of the amhr2b locus in P. schrenkii suggest that this duplication could be also male-specific as it is in P. flavescens. In P. fluviatilis, a relatively small (100 kb) non-recombinant sex-determining region (SDR) was characterized on chromosome 18 using population-genomics approaches. This SDR is characterized by many male-specific single-nucleotide variations (SNVs) and no large duplication/insertion event, suggesting that P. fluviatilis has a male heterogametic sex-determination system (XX/XY), generated by allelic diversification. This SDR contains six annotated genes, including three (c18h1orf198, hsdl1, tbc1d32) with higher expression in the testis than in the ovary.

conclusionsTogether, our results provide a new example of the highly dynamic sex chromosome turnover in teleosts and provide new genomic resources for Percidae, including sex-genotyping tools for all three known Perca species.

Indexed as

Evolution, MolecularSex Determination ProcessesAnimalsFemaleGenomeMalePerchesPhylogenyReceptors, PeptideReceptors, Transforming Growth Factor betaanti-Mullerian hormone receptorReceptors, PeptideReceptors, Transforming Growth Factor betaGenomePerchesPikeperchesSex chromosomesSex-determination

Identifiers

PMID38926709
PMCPMC11209984

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.