Evidence map›Paper›PMID 38926506›Full record

ArticleNature cell biology2024

Loss of Kmt2c or Kmt2d drives brain metastasis via KDM6A-dependent upregulation of MMP3.

Marco Seehawer, Zheqi Li, Jun Nishida, Pierre Foidart, Andrew H Reiter, Ernesto Rojas-Jimenez, Marie-Anne Goyette, Pengze Yan, Shaunak Raval, Miguel Munoz Gomez and 4 more

Abstract read
In one paragraph

Article in Nature cell biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed, 1 synthesis or guideline pooled it.

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  12. Amoeboid-mesenchymal transition and the proteolytic control of cancer invasion plasticity.Proceedings of the National Academy of Sciences of the United States of America · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Marco SeehawerDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA, USA.ORCID 0000-0003-0440-6967
Zheqi LiDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA, USA.ORCID 0000-0003-1213-640X
Jun NishidaDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA, USA.ORCID 0000-0001-5098-9361
Pierre FoidartDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA, USA.
Andrew H ReiterThe Eli and Edythe L. Broad Institute, Cambridge, MA, USA.ORCID 0000-0003-1406-4913
Ernesto Rojas-JimenezDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA, USA.
Marie-Anne GoyetteDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA, USA.ORCID 0000-0003-3199-2252
Pengze YanDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA, USA.
Shaunak RavalThe Eli and Edythe L. Broad Institute, Cambridge, MA, USA.
Miguel Munoz GomezCenter for Functional Cancer Epigenetics, Dana-Farber Cancer Institute, Boston, MA, USA.
Paloma CejasCenter for Functional Cancer Epigenetics, Dana-Farber Cancer Institute, Boston, MA, USA.ORCID 0000-0002-2090-7748
Henry W LongCenter for Functional Cancer Epigenetics, Dana-Farber Cancer Institute, Boston, MA, USA.ORCID 0000-0001-6849-6629
Malvina PapanastasiouThe Eli and Edythe L. Broad Institute, Cambridge, MA, USA.ORCID 0000-0003-3378-6612
Kornelia PolyakDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA, USA. kornelia_polyak@dfci.harvard.edu.ORCID 0000-0002-5964-0382

Funding

Targeting intratumor heterogeneity in breast cancerR35CA197623 · NCI · DANA-FARBER CANCER INST · PI KORNELIA POLYAK · 2015 to 2026
$12.4M
Tissue and Pathology CoreP01CA250959 · NCI · DANA-FARBER CANCER INST · PI POLYAK, KORNELIA · 2020 to 2024
$8.6M
Canadian Institute for Advanced Research (L'Institut Canadien de Recherches Avancées) NAEuropean Molecular Biology Organization (EMBO) NANCI NIH HHS P01 CA250959NCI NIH HHS R35 CA197623U.S. Department of Health & Human Services | NIH | National Cancer Institute (NCI) CA197623U.S. Department of Health & Human Services | NIH | National Cancer Institute (NCI) CA250959
6 · The paper itself

Abstract

KMT2C and KMT2D, encoding histone H3 lysine 4 methyltransferases, are among the most commonly mutated genes in triple-negative breast cancer (TNBC). However, how these mutations may shape epigenomic and transcriptomic landscapes to promote tumorigenesis is largely unknown. Here we describe that deletion of Kmt2c or Kmt2d in non-metastatic murine models of TNBC drives metastasis, especially to the brain. Global chromatin profiling and chromatin immunoprecipitation followed by sequencing revealed altered H3K4me1, H3K27ac and H3K27me3 chromatin marks in knockout cells and demonstrated enhanced binding of the H3K27me3 lysine demethylase KDM6A, which significantly correlated with gene expression. We identified Mmp3 as being commonly upregulated via epigenetic mechanisms in both knockout models. Consistent with these findings, samples from patients with KMT2C-mutant TNBC have higher MMP3 levels. Downregulation or pharmacological inhibition of KDM6A diminished Mmp3 upregulation induced by the loss of histone-lysine N-methyltransferase 2 (KMT2) and prevented brain metastasis similar to direct downregulation of Mmp3. Taken together, we identified the KDM6A-matrix metalloproteinase 3 axis as a key mediator of KMT2C/D loss-driven metastasis in TNBC.

Indexed as

Brain NeoplasmsGene Expression Regulation, NeoplasticHistone DemethylasesMatrix Metalloproteinase 3Triple Negative Breast NeoplasmsUp-RegulationAnimalsCell Line, TumorDNA-Binding ProteinsEpigenesis, GeneticFemaleHistone-Lysine N-MethyltransferaseHumansMiceMice, KnockoutMyeloid-Lymphoid Leukemia ProteinDNA-Binding ProteinsHistone DemethylasesHistone-Lysine N-MethyltransferaseKDM6A protein, humanKMT2C protein, humanKMT2D protein, humanKmt2d protein, mouseMatrix Metalloproteinase 3MMP3 protein, humanMyeloid-Lymphoid Leukemia ProteinNeoplasm Proteins

Identifiers

PMID38926506
PMCPMC11251985

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.