Evidence map›Paper›PMID 38923164›Full record

ArticleAlzheimer's & dementia : the journal of the Alzheimer's Association2024

Loss of Inpp5d has disease-relevant and sex-specific effects on glial transcriptomes.

Luke C Dabin, Holly Kersey, Byungwook Kim, Dominic J Acri, Daniel Sharify, Audrey Lee-Gosselin, Cristian A Lasagna-Reeves, Adrian L Oblak, Bruce T Lamb, Jungsu Kim

Abstract read
In one paragraph

Article in Alzheimer's & dementia : the journal of the Alzheimer's Association, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. bioRxiv : the preprint server for biology · 2026
    Article
  2. Article
  3. Review
  4. Article
  5. Prosaposin in CNS health and disease, metabolic stress and exercise adaptation.Journal of molecular medicine (Berlin, Germany) · 2026
    Review
  6. Article
  7. Deletion of neuronal Idol ameliorates Alzheimer's disease-related pathologies via APOE receptors.Alzheimer's & dementia : the journal of the Alzheimer's Association · 2025
    Article
  8. Advancements in Immunity and Dementia Research: Highlights from the 2023 AAIC Advancements: Immunity Conference.Alzheimer's & dementia : the journal of the Alzheimer's Association · 2025
    Review
  9. Loss of Inpp5d has disease-relevant and sex-specific effects on glial transcriptomes.Alzheimer's & dementia : the journal of the Alzheimer's Association · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Luke C DabinDepartment of Medical & Molecular Genetics, Indiana University School of Medicine, Indianapolis, Indiana, USA.
Holly KerseyDepartment of Medical & Molecular Genetics, Indiana University School of Medicine, Indianapolis, Indiana, USA.
Byungwook KimDepartment of Medical & Molecular Genetics, Indiana University School of Medicine, Indianapolis, Indiana, USA.
Dominic J AcriDepartment of Medical & Molecular Genetics, Indiana University School of Medicine, Indianapolis, Indiana, USA.
Daniel SharifyDepartment of Medical & Molecular Genetics, Indiana University School of Medicine, Indianapolis, Indiana, USA.
Audrey Lee-GosselinStark Neuroscience Research Institute, Indiana University School of Medicine, Indianapolis, Indiana, USA.
Cristian A Lasagna-ReevesStark Neuroscience Research Institute, Indiana University School of Medicine, Indianapolis, Indiana, USA.
Adrian L OblakStark Neuroscience Research Institute, Indiana University School of Medicine, Indianapolis, Indiana, USA.
Bruce T LambDepartment of Medical & Molecular Genetics, Indiana University School of Medicine, Indianapolis, Indiana, USA.
Jungsu KimDepartment of Medical & Molecular Genetics, Indiana University School of Medicine, Indianapolis, Indiana, USA.

Funding

The role of ABI3 in Alzheimers diseaseR01AG071281 · NIA · INDIANA UNIVERSITY INDIANAPOLIS · PI KIM, JUNGSU · 2021 to 2025
$3.7M
Molecular genetic analyses of transcriptional dysregulation in Alzheimers diseaseR01AG077829 · NIA · INDIANA UNIVERSITY INDIANAPOLIS · PI Jungsu Kim · 2022 to 2026
$3.6M
The role of ABI3 in Alzheimers diseaseRF1AG074543 · NIA · INDIANA UNIVERSITY INDIANAPOLIS · PI KIM, JUNGSU · 2021 to 2021
$2.3M
The role of ABI3 in Alzheimers diseaseR01AG074543 · NIA · INDIANA UNIVERSITY INDIANAPOLIS · PI KIM, JUNGSU · 2024 to 2025
$1.3M
Generation of Abi3 conditional knockout mouse modelR21AG072738 · NIA · INDIANA UNIVERSITY INDIANAPOLIS · PI KIM, JUNGSU · 2021 to 2021
$432k
Alzheimer's Association Fellowship AARF-21-852175Indiana Genomic Initiative at Indiana UniversityIndiana University Grand Challenges Precision Health InitiativeIndiana University Pervasive Technology InstituteIndiana University School of MedicineLilly EndowmentNIA NIH HHS R01 AG071281NIA NIH HHS R01 AG074543NIA NIH HHS R01 AG077829NIA NIH HHS R21 AG072738NIA NIH HHS RF1 AG074543NIH HHS R01AG071281NIH HHS R01AG077829NIH HHS R21AG072738NIH HHS RF1AG074543
6 · The paper itself

Abstract

introductionInpp5d is genetically associated with Alzheimer's disease risk. Loss of Inpp5d alters amyloid pathology in models of amyloidosis. Inpp5d is expressed predominantly in microglia but its function in brain is poorly understood.

methodsWe performed single-cell RNA sequencing to study the effect of Inpp5d loss on wild-type mouse brain transcriptomes.

resultsLoss of Inpp5d has sex-specific effects on the brain transcriptome. Affected genes are enriched for multiple neurodegeneration terms. Network analyses reveal a gene co-expression module centered around Inpp5d in female mice. Inpp5d loss alters Pleotrophin (PTN), Prosaposin (PSAP), and Vascular Endothelial Growth Factor A (VEGFA) signaling probability between cell types. DISCUSSION: Our data suggest that the normal function of Inpp5d is entangled with mechanisms involved in neurodegeneration. We report the effect of Inpp5d loss without pathology and show that this has dramatic effects on gene expression. Our study provides a critical reference for researchers of neurodegeneration, allowing separation of disease-specific changes mediated by Inpp5d in disease from baseline effects of Inpp5d loss. HIGHLIGHTS: Loss of Inpp5d has different effects in male and female mice. Genes dysregulated by Inpp5d loss relate to neurodegeneration. Total loss of Inpp5d in female mice collapses a conserved gene co-expression module. Loss of microglial Inpp5d affects the transcriptome of other cell types.

Indexed as

TranscriptomeAlzheimer DiseaseAnimalsBrainDisease Models, AnimalFemaleMaleMiceMicrogliaNeurogliaPhosphatidylinositol-3,4,5-Trisphosphate 5-PhosphatasesSex FactorsInpp5d protein, mousePhosphatidylinositol-3,4,5-Trisphosphate 5-PhosphatasesAlzheimerdementiaInpp5dmicroglianetwork analysisneurodegenerationsex differencesingle‐celltranscriptomics

Identifiers

PMID38923164
PMCPMC11350029

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.