Evidence map›Paper›PMID 38922186›Full record

ArticleJournal of immunology (Baltimore, Md. : 1950)2024

Single-cell Transcriptional Landscape of Temporal Neutrophil Response to Burn Wound in Larval Zebrafish.

Yiran Hou, Parth Khatri, Julie Rindy, Zachery Schultz, Anqi Gao, Zhili Chen, Angela L F Gibson, Anna Huttenlocher, Huy Q Dinh

Abstract read
In one paragraph

Article in Journal of immunology (Baltimore, Md. : 1950), 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors.

Yiran HouDepartment of Medical Microbiology and Immunology, University of Wisconsin School of Medicine and Public Health, Madison, WI.ORCID 0000-0002-6086-6434
Parth KhatriMcArdle Laboratory for Cancer Research, Department of Oncology, University of Wisconsin School of Medicine and Public Health, Madison, WI.ORCID 0000-0003-1998-5324
Julie RindyDepartment of Medical Microbiology and Immunology, University of Wisconsin School of Medicine and Public Health, Madison, WI.ORCID 0000-0002-4242-6427
Zachery SchultzMcArdle Laboratory for Cancer Research, Department of Oncology, University of Wisconsin School of Medicine and Public Health, Madison, WI.
Anqi GaoMcArdle Laboratory for Cancer Research, Department of Oncology, University of Wisconsin School of Medicine and Public Health, Madison, WI.ORCID 0000-0002-8383-4283
Zhili ChenDepartment of Medical Microbiology and Immunology, University of Wisconsin School of Medicine and Public Health, Madison, WI.ORCID 0009-0003-1172-0900
Angela L F GibsonDepartment of Surgery, University of Wisconsin School of Medicine and Public Health, Madison, WI.ORCID 0000-0003-1181-7481
Anna HuttenlocherDepartment of Medical Microbiology and Immunology, University of Wisconsin School of Medicine and Public Health, Madison, WI.
Huy Q DinhMcArdle Laboratory for Cancer Research, Department of Oncology, University of Wisconsin School of Medicine and Public Health, Madison, WI.ORCID 0000-0002-3307-1126

Funding

UW COMPREHENSIVE CANCER CENTER SUPPORTP30CA014520 · NCI · UNIVERSITY OF WISCONSIN-MADISON · PI AMY TRENTHAM-DIETZ · 1985 to 2026
$142.6M
Research Training for Computation and Informatics in Biology and MedicineT15LM007359 · NLM · UNIVERSITY OF WISCONSIN-MADISON · PI Mark W. Craven, Colin Noel Dewey · 2002 to 2026
$22.6M
Cell migration and wound repairR35GM118027 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI Anna Huttenlocher · 2016 to 2026
$7.5M
Neutrophil heterogeneity and plasticity in wound healingR35GM150893 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI Huy Quang Dinh · 2023 to 2026
$1.6M
American Association of Immunologists (AAI)HHS | NIH | National Institute of General Medical Sciences (NIGMS) R35GM118027HHS | NIH | National Institute of General Medical Sciences (NIGMS) R35GM150893HHS | NIH | U.S. National Library of Medicine (NLM) NLM5T15LM007359NCI NIH HHS P30 CA014520NIGMS NIH HHS R35 GM118027NIGMS NIH HHS R35 GM150893NLM NIH HHS T15 LM007359
6 · The paper itself

Abstract

Neutrophils accumulate early in tissue injury. However, the cellular and functional heterogeneity of neutrophils during homeostasis and in response to tissue damage remains unclear. In this study, we use larval zebrafish to understand neutrophil responses to thermal injury. Single-cell transcriptional mapping of myeloid cells during a 3-d time course in burn and control larvae revealed distinct neutrophil subsets and their cell-cell interactions with macrophages across time and conditions. The trajectory formed by three zebrafish neutrophil subsets resembles human neutrophil maturation, with varying transition patterns between conditions. Through ligand-receptor cell-cell interaction analysis, we found that neutrophils communicate more in burns in a pathway and temporal manner. Finally, we identified the correlation between zebrafish myeloid signatures and human burn severity, establishing GPR84+ neutrophils as a potential marker of early innate immune response in burns. This work builds a comparative single-cell transcriptomic framework to identify neutrophil markers of tissue damage using model organisms.

Indexed as

BurnsLarvaNeutrophilsSingle-Cell AnalysisZebrafishAnimalsCell CommunicationDisease Models, AnimalHumansImmunity, InnateMacrophagesTranscriptome

Identifiers

PMID38922186
PMCPMC11300161

What OpenQuestion holds

Textmetadata
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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.