Evidence map›Paper›PMID 38922025›Full record

ArticleVeterinary sciences2024

Automated Nuclear Morphometry: A Deep Learning Approach for Prognostication in Canine Pulmonary Carcinoma to Enhance Reproducibility.

Imaine Glahn, Andreas Haghofer, Taryn A Donovan, Brigitte Degasperi, Alexander Bartel, Theresa Kreilmeier-Berger, Philip S Hyndman, Hannah Janout, Charles-Antoine Assenmacher, Florian Bartenschlager and 12 more

Abstract read
In one paragraph

Article in Veterinary sciences, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Review
  2. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

22 authors.

Imaine GlahnInstitute of Pathology, University of Veterinary Medicine Vienna, 1210 Vienna, Austria.ORCID 0009-0003-9247-9302
Andreas HaghoferBioinformatics Research Group, University of Applied Sciences Upper Austria, 4232 Hagenberg, Austria.ORCID 0000-0001-6649-5374
Taryn A DonovanDepartment of Anatomic Pathology, The Schwarzman Animal Medical Center, New York, NY 10065, USA.ORCID 0000-0001-5740-9550
Brigitte DegasperiUniversity Clinic for Small Animals, University of Veterinary Medicine Vienna, 1210 Vienna, Austria.
Alexander BartelInstitute for Veterinary Epidemiology and Biostatistics, Freie Universität Berlin, 14163 Berlin, Germany.ORCID 0000-0002-1280-6138
Theresa Kreilmeier-BergerUniversity Clinic for Small Animals, University of Veterinary Medicine Vienna, 1210 Vienna, Austria.ORCID 0000-0001-5346-2821
Philip S HyndmanDepartment of Anatomic Pathology, The Schwarzman Animal Medical Center, New York, NY 10065, USA.ORCID 0000-0003-4367-4032
Hannah JanoutBioinformatics Research Group, University of Applied Sciences Upper Austria, 4232 Hagenberg, Austria.ORCID 0000-0002-0294-3585
Charles-Antoine AssenmacherComparative Pathology Core, Department of Pathobiology, University of Pennsylvania, Philadelphia, PA 19104, USA.ORCID 0000-0003-0073-2730
Florian BartenschlagerInstitute of Veterinary Pathology, Freie Universität Berlin, 14163 Berlin, Germany.
Pompei BolfaDepartment of Biomedical Sciences, Ross University School of Veterinary Medicine, Basseterre P.O. Box 334, Saint Kitts and Nevis.ORCID 0000-0002-2903-1535
Michael J DarkCollege of Veterinary Medicine, University of Florida, Gainesville, FL 32611, USA.ORCID 0000-0002-6547-1298
Andrea KlangInstitute of Pathology, University of Veterinary Medicine Vienna, 1210 Vienna, Austria.
Robert KlopfleischInstitute of Veterinary Pathology, Freie Universität Berlin, 14163 Berlin, Germany.ORCID 0000-0002-6308-0568
Sophie MerzIDEXX Vet Med Labor GmbH, 70806 Kornwestheim, Germany.
Barbara RichterInstitute of Pathology, University of Veterinary Medicine Vienna, 1210 Vienna, Austria.
F Yvonne SchulmanAntech Diagnostics, Mars Petcare Science and Diagnostics, Fountain Valley, CA 92708, USA.ORCID 0000-0002-7454-8517
Jonathan GanzDepartment of Computer Science, Technische Hochschule Ingolstadt, 85049 Ingolstadt, Germany.
Josef ScharingerDepartment of Computer Science, Johannes Kepler University, 4040 Linz, Austria.ORCID 0000-0001-6502-7501
Marc AubrevilleDepartment of Computer Science, Technische Hochschule Ingolstadt, 85049 Ingolstadt, Germany.ORCID 0000-0002-5294-5247
Stephan M WinklerBioinformatics Research Group, University of Applied Sciences Upper Austria, 4232 Hagenberg, Austria.
Christof A BertramInstitute of Pathology, University of Veterinary Medicine Vienna, 1210 Vienna, Austria.ORCID 0000-0002-2402-9997

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The integration of deep learning-based tools into diagnostic workflows is increasingly prevalent due to their efficiency and reproducibility in various settings. We investigated the utility of automated nuclear morphometry for assessing nuclear pleomorphism (NP), a criterion of malignancy in the current grading system in canine pulmonary carcinoma (cPC), and its prognostic implications. We developed a deep learning-based algorithm for evaluating NP (variation in size, i.e., anisokaryosis and/or shape) using a segmentation model. Its performance was evaluated on 46 cPC cases with comprehensive follow-up data regarding its accuracy in nuclear segmentation and its prognostic ability. Its assessment of NP was compared to manual morphometry and established prognostic tests (pathologists' NP estimates (

Indexed as

anisokaryosisartificial intelligencedogimage processingmitotic countnuclear pleomorphismprognosispulmonary carcinoma

Identifiers

PMID38922025
PMCPMC11209399

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.