Evidence map›Paper›PMID 38921784›Full record

ArticlePathogens (Basel, Switzerland)2024

Detection of Human Adenovirus and Rotavirus in Wastewater in Lusaka, Zambia: Demonstrating the Utility of Environmental Surveillance for the Community.

Ngonda Saasa, Ethel M'kandawire, Joseph Ndebe, Mulenga Mwenda, Fred Chimpukutu, Andrew Nalishuwa Mukubesa, Fred Njobvu, Doreen Mainza Shempela, Jay Sikalima, Carol Chiyesu and 29 more

Abstract read
In one paragraph

Article in Pathogens (Basel, Switzerland), 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
  3. Environmental surveillance of pathogens in Africa.Applied and environmental microbiology · 2026
    Review
  4. Article
  5. Review
  6. Wastewater Surveillance of SARS-CoV-2 in Zambia: An Early Warning Tool.International journal of molecular sciences · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

39 authors.

Ngonda SaasaDepartment of Disease Control, School of Veterinary Medicine, University of Zambia, Lusaka 10101, Zambia.ORCID 0000-0001-6470-4582
Ethel M'kandawireDepartment of Disease Control, School of Veterinary Medicine, University of Zambia, Lusaka 10101, Zambia.
Joseph NdebeDepartment of Disease Control, School of Veterinary Medicine, University of Zambia, Lusaka 10101, Zambia.ORCID 0000-0002-3070-8830
Mulenga MwendaPATH-Zambia, National Malaria Elimination Centre, Chainama Hospital Grounds, Lusaka 10101, Zambia.
Fred ChimpukutuEffluents and Pollution Control, Lusaka Water Supply and Sanitation Company, Stand No. 871/2, Katemo Road, Rhodes Park, P.O. Box 50198, Lusaka 10101, Zambia.
Andrew Nalishuwa MukubesaDepartment of Disease Control, School of Veterinary Medicine, University of Zambia, Lusaka 10101, Zambia.
Fred NjobvuPATH-Zambia, National Malaria Elimination Centre, Chainama Hospital Grounds, Lusaka 10101, Zambia.
Doreen Mainza ShempelaChurches Health Association of Zambia (CHAZ), CHAZ Complex, Meanwood Drive (off Great East Road), Plot No. 2882/B/5/10, P.O. Box 34511, Lusaka 10101, Zambia.ORCID 0009-0003-4945-6746
Jay SikalimaChurches Health Association of Zambia (CHAZ), CHAZ Complex, Meanwood Drive (off Great East Road), Plot No. 2882/B/5/10, P.O. Box 34511, Lusaka 10101, Zambia.
Carol ChiyesuPATH-Zambia, National Malaria Elimination Centre, Chainama Hospital Grounds, Lusaka 10101, Zambia.
Bruce MuvwangaDepartment of Disease Control, School of Veterinary Medicine, University of Zambia, Lusaka 10101, Zambia.
Sarah M NampokolweDepartment of Disease Control, School of Veterinary Medicine, University of Zambia, Lusaka 10101, Zambia.
Clement SulweDepartment of Disease Control, School of Veterinary Medicine, University of Zambia, Lusaka 10101, Zambia.
Thokozile KhondiwaDepartment of Disease Control, School of Veterinary Medicine, University of Zambia, Lusaka 10101, Zambia.
Todd JenningsPATH-Zambia, National Malaria Elimination Centre, Chainama Hospital Grounds, Lusaka 10101, Zambia.
Ameck KamangaPATH-Zambia, National Malaria Elimination Centre, Chainama Hospital Grounds, Lusaka 10101, Zambia.
Edgar SimulunduDepartment of Disease Control, School of Veterinary Medicine, University of Zambia, Lusaka 10101, Zambia.ORCID 0000-0001-9423-0816
Conceptor MulubePATH-Zambia, National Malaria Elimination Centre, Chainama Hospital Grounds, Lusaka 10101, Zambia.
Wizaso MwasingaDepartment of Disease Control, School of Veterinary Medicine, University of Zambia, Lusaka 10101, Zambia.ORCID 0000-0002-1074-3436
Jalaimo MumekaEffluents and Pollution Control, Lusaka Water Supply and Sanitation Company, Stand No. 871/2, Katemo Road, Rhodes Park, P.O. Box 50198, Lusaka 10101, Zambia.
John SimwanzaZambia National Public Health Institute, Stand 1186, Corner of Chaholi & Addis Ababa Road, Rhodes Park, Lusaka 10101, Zambia.
Patrick SakubitaZambia National Public Health Institute, Stand 1186, Corner of Chaholi & Addis Ababa Road, Rhodes Park, Lusaka 10101, Zambia.
Otridah KaponaZambia National Public Health Institute, Stand 1186, Corner of Chaholi & Addis Ababa Road, Rhodes Park, Lusaka 10101, Zambia.ORCID 0000-0002-0961-4661
Chilufya Susan Aneta MulengaZambia National Public Health Institute, Stand 1186, Corner of Chaholi & Addis Ababa Road, Rhodes Park, Lusaka 10101, Zambia.
Musole ChipoyaZambia National Public Health Institute, Stand 1186, Corner of Chaholi & Addis Ababa Road, Rhodes Park, Lusaka 10101, Zambia.
Kunda MusondaZambia National Public Health Institute, Stand 1186, Corner of Chaholi & Addis Ababa Road, Rhodes Park, Lusaka 10101, Zambia.
Nathan KapataZambia National Public Health Institute, Stand 1186, Corner of Chaholi & Addis Ababa Road, Rhodes Park, Lusaka 10101, Zambia.
Nyambe SinyangeZambia National Public Health Institute, Stand 1186, Corner of Chaholi & Addis Ababa Road, Rhodes Park, Lusaka 10101, Zambia.
Muzala KapinaZambia National Public Health Institute, Stand 1186, Corner of Chaholi & Addis Ababa Road, Rhodes Park, Lusaka 10101, Zambia.
Joyce SiwilaDepartment of Clinical Studies, School of Veterinary Medicine, The University of Zambia, P.O. Box 32379, Lusaka 10101, Zambia.
Misheck ShawaHokudai Center for Zoonosis Control in Zambia, School of Veterinary Medicine, University of Zambia, Lusaka 10101, Zambia.
Masahiro KajiharaHokudai Center for Zoonosis Control in Zambia, School of Veterinary Medicine, University of Zambia, Lusaka 10101, Zambia.ORCID 0000-0001-9478-0439
Ayato TakadaDepartment of Disease Control, School of Veterinary Medicine, University of Zambia, Lusaka 10101, Zambia.ORCID 0000-0003-2464-6642
Hirofumi SawaHokudai Center for Zoonosis Control in Zambia, School of Veterinary Medicine, University of Zambia, Lusaka 10101, Zambia.ORCID 0000-0003-2569-2755
Simulyamana A ChoongaMinistry of Health, Lusaka Provincial Health Office, 3 Saise Road, P.O. Box 32573, Lusaka 10101, Zambia.
Roma ChilengiZambia National Public Health Institute, Stand 1186, Corner of Chaholi & Addis Ababa Road, Rhodes Park, Lusaka 10101, Zambia.
Earnest MuyundaPATH-Zambia, National Malaria Elimination Centre, Chainama Hospital Grounds, Lusaka 10101, Zambia.
King S NalubambaDepartment of Clinical Studies, School of Veterinary Medicine, The University of Zambia, P.O. Box 32379, Lusaka 10101, Zambia.
Bernard M Hang'ombeDepartment of Paraclinical Studies, School of Veterinary Medicine, The University of Zambia, P.O. Box 32379, Lusaka 10101, Zambia.

Funding

Bayer Foundation AWD-585926Japan Agency for Medical Research and Development (AMED) JP223fa627005 and JP23wm0125008
6 · The paper itself

Abstract

Enteric infections due to viral pathogens are a major public health concern. Detecting the risk areas requires a strong surveillance system for pathogenic viruses in sources such as wastewater. Towards building an environmental surveillance system in Zambia, we aimed to identify group A rotavirus (RVA) and human adenovirus (HAdV) in wastewater. Convenient sampling was conducted at four study sites every Tuesday for five consecutive weeks. The research team focused on three different methods of viral concentration to determine the suitability in terms of cost and applicability for a regular surveillance system: the bag-mediated filtration system (BMFS), polyethylene glycol-based (PEG) precipitation, and skimmed milk (SM) flocculation. We screened 20 wastewater samples for HAdV and RVA using quantitative polymerase chain reaction (qPCR) and conventional polymerase chain reaction (cPCR). Of the 20 samples tested using qPCR, 18/20 (90%) tested positive for HAdV and 14/20 (70%) tested positive for RVA. For the genetic sequencing, qPCR positives were subjected to cPCR, of which 12 positives were successfully amplified. The human adenovirus was identified with a nucleotide identity range of 98.48% to 99.53% compared with the reference genome from GenBank. The BMFS and SM flocculation were the most consistent viral concentration methods for HAdV and RVA, respectively. A statistical analysis of the positives showed that viral positivity differed by site (

Indexed as

Adenoviruses, HumanEnvironmental MonitoringRotavirusWastewaterHumansZambiaWastewateradenovirusconcentration methodsenvironmental surveillancerotaviruswastewater

Identifiers

PMID38921784
PMCPMC11206273

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.