Evidence map›Paper›PMID 38920701›Full record

ArticleCells2024

ScRNA-Seq Analyses Define the Role of GATA3 in iNKT Cell Effector Lineage Differentiation.

Tzong-Shyuan Tai, Huang-Yu Yang, Wan-Chu Chuang, Yu-Wen Huang, I-Cheng Ho, Ching-Chung Tsai, Ya-Ting Chuang

Abstract read
In one paragraph

Article in Cells, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. [Research progress on the role of invariant natural killer T cells in immune-mediated liver injury].Zhonghua gan zang bing za zhi = Zhonghua ganzangbing zazhi = Chinese journal of hepatology · 2025
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Tzong-Shyuan TaiDepartment of Medical Research and Development, Chang Gung Memorial Hospital, Taoyuan 33305, Taiwan.
Huang-Yu YangKidney Research Center, Department of Nephrology, Chang Gung Memorial Hospital, Taoyuan 33305, Taiwan.
Wan-Chu ChuangDepartment of Medical Research, National Taiwan University Hospital, Taipei 10002, Taiwan.
Yu-Wen HuangDepartment of Medical Research, National Taiwan University Hospital, Taipei 10002, Taiwan.ORCID 0000-0002-0063-2222
I-Cheng HoDivision of Rheumatology, Inflammation, and Immunity, Department of Medicine, Brigham and Women's Hospital, 60 Fenwood Road, Boston, MA 02115, USA.
Ching-Chung TsaiDepartment of Pediatrics, E-Da Hospital, I-Shou University, Kaohsiung City 82445, Taiwan.ORCID 0000-0001-5719-8730
Ya-Ting ChuangDepartment of Medical Research, National Taiwan University Hospital, Taipei 10002, Taiwan.

Funding

Detecting RORgt CitrullinationR03AI155935 · NIAID · BRIGHAM AND WOMEN'S HOSPITAL · PI HO, I-CHENG · 2021 to 2022
$171k
Chang Gung Memorial Hospital CMRPG3L0192National Science and Technology Council 111-2320-B-002 -082 -MY3National Taiwan University Hospital 111-S0068National Taiwan University Hospital 112-EDN0005NIH HHS 1C06AI155935-23A1
6 · The paper itself

Abstract

While the transcription factor GATA-3 is well-established for its crucial role in T cell development, its specific influence on invariant natural killer T (iNKT) cells remains relatively unexplored. Using flow cytometry and single-cell transcriptomic analysis, we demonstrated that GATA-3 deficiency in mice leads to the absence of iNKT2 and iNKT17 cell subsets, as well as an altered distribution of iNKT1 cells. Thymic iNKT cells lacking GATA-3 exhibited diminished expression of PLZF and T-bet, key transcription factors involved in iNKT cell differentiation, and reduced production of Th2, Th17, and cytotoxic effector molecules. Single-cell transcriptomics revealed a comprehensive absence of iNKT17 cells, a substantial reduction in iNKT2 cells, and an increase in iNKT1 cells in GATA-3-deficient thymi. Differential expression analysis highlighted the regulatory role of GATA-3 in T cell activation signaling and altered expression of genes critical for iNKT cell differentiation, such as

Indexed as

Cell DifferentiationCell LineageGATA3 Transcription FactorNatural Killer T-CellsAnimalsMiceMice, Inbred C57BLMice, KnockoutRNA-SeqSingle-Cell AnalysisSingle-Cell Gene Expression AnalysisGata3 protein, mouseGATA3 Transcription FactorCD127GATA-3IcosiNKT cellssingle-cell RNA sequencing

Identifiers

PMID38920701
PMCPMC11201670

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.