Evidence map›Paper›PMID 38920684›Full record

ArticleCells2024

Molecular Profiling and the Interaction of Somatic Mutations with Transcriptomic Profiles in Non-Melanoma Skin Cancer (NMSC) in a Population Exposed to Arsenic.

Farzana Jasmine, Maria Argos, Yuliia Khamkevych, Tariqul Islam, Muhammad Rakibuz-Zaman, Mohammad Shahriar, Christopher R Shea, Habibul Ahsan, Muhammad G Kibriya

Abstract read
In one paragraph

Article in Cells, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Imaging transcriptomics in basal cell carcinoma: Coupling in vivo tumor morphology with gene expression.JID innovations : skin science from molecules to population health · 2026
    Article
  2. Review
  3. Article
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Farzana JasmineInstitute for Population and Precision Health (IPPH), University of Chicago, Chicago, IL 60637, USA.ORCID 0000-0002-5980-1174
Maria ArgosEpidemiology & Biostatistics, Global Health, University of Illinois Chicago, Chicago, IL 60612, USA.ORCID 0000-0003-4234-252X
Yuliia KhamkevychInstitute for Population and Precision Health (IPPH), University of Chicago, Chicago, IL 60637, USA.
Tariqul IslamUChicago Research Bangladesh (URB), University of Chicago, Dhaka 1230, Bangladesh.
Muhammad Rakibuz-ZamanPulse Infoframe, London, ON N5X 4E7, Canada.
Mohammad ShahriarInstitute for Population and Precision Health (IPPH), University of Chicago, Chicago, IL 60637, USA.
Christopher R SheaDivision of Dermatology, Department of Medicine, University of Chicago, Chicago, IL 60637, USA.
Habibul AhsanInstitute for Population and Precision Health (IPPH), University of Chicago, Chicago, IL 60637, USA.
Muhammad G KibriyaInstitute for Population and Precision Health (IPPH), University of Chicago, Chicago, IL 60637, USA.ORCID 0000-0001-9784-6958

Funding

Chemoprevention of arsenic-induced skin cancerR01CA107431 · NCI · UNIVERSITY OF CHICAGO · PI AHSAN, HABIBUL · 2005 to 2014
$17.3M
Pilot Program CoreP30ES027792 · NIEHS · UNIVERSITY OF CHICAGO · PI Gokhan M. Mutlu, Gail S Prins · 2017 to 2026
$13.6M
NCI NIH HHS R01 CA107431NIEHS NIH HHS P30 ES027792NIH HHS P30ES027792
6 · The paper itself

Abstract

Exposure to inorganic arsenic (As) is recognized as a risk factor for non-melanoma skin cancer (NMSC). We followed up with 7000 adults for 6 years who were exposed to As. During follow-up, 2.2% of the males and 1.3% of the females developed basal cell carcinoma (BCC), while 0.4% of the male and 0.2% of the female participants developed squamous cell carcinoma (SCC). Using a panel of more than 400 cancer-related genes, we detected somatic mutations (SMs) in the first 32 NMSC samples (BCC = 26 and SCC = 6) by comparing paired (tissue-blood) samples from the same individual and then comparing them to the SM in healthy skin tissue from 16 participants. We identified (a) a list of NMSC-associated SMs, (b) SMs present in both NMSC and healthy skin, and (c) SMs found only in healthy skin. We also demonstrate that the presence of non-synonymous SMs in the top mutated genes (like

Indexed as

ArsenicMutationSkin NeoplasmsTranscriptomeAdultAgedBasal Cell CarcinomaCarcinoma, Squamous CellFemaleGene Expression ProfilingGene Expression Regulation, NeoplasticHumansMaleMiddle AgedArsenicarsenic exposurebasal cell carcinomagene–environment interactionhedgehog signalingiL-17 signalingnotch signalingsomatic mutationsquamous cell carcinoma

Identifiers

PMID38920684
PMCPMC11201393

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.