Evidence map›Paper›PMID 38920383›Full record

ArticlemSphere2024

Nucleoid-associated proteins shape the global protein occupancy and transcriptional landscape of a clinical isolate of

Yulduz Rakibova, Drew T Dunham, Kimberley D Seed, Lydia Freddolino

Abstract read
In one paragraph

Article in mSphere, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Genetics, ecology and evolution of phage satellites.Nature reviews. Microbiology · 2025
    Review
  10. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

4 authors.

Yulduz Rakibova *Department of Biological Chemistry, University of Michigan, Ann Arbor, Michigan, USA.ORCID 0009-0000-7363-5056
Drew T Dunham *Department of Plant and Microbial Biology, University of California, Berkeley, California, USA.
Kimberley D SeedDepartment of Plant and Microbial Biology, University of California, Berkeley, California, USA.ORCID 0000-0002-0139-1600
Lydia FreddolinoDepartment of Biological Chemistry, University of Michigan, Ann Arbor, Michigan, USA.ORCID 0000-0002-5821-4226

Funding

Structure-based functional annotation of microbial genomesR01AI134678 · NIAID · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI Lydia Petra Freddolino, SCOTT J. HULTGREN · 2018 to 2026
$6.5M
Phage resistance and mobile genetic elements in Vibrio choleraeR01AI127652 · NIAID · UNIVERSITY OF CALIFORNIA BERKELEY · PI SEED, KIMBERLEY DIANE · 2016 to 2025
$4.6M
Building a unified framework for understanding bacterial gene regulation and chromosomal architectureR35GM128637 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI Lydia Petra Freddolino · 2018 to 2026
$3.6M
National Science Foundation (NSF) 2018257700NIAID NIH HHS R01 AI127652NIAID NIH HHS R01 AI134678NIGMS NIH HHS R35 GM128637
6 · The paper itself

Abstract

IMPORTANCE: New strains of the bacterial pathogen

Indexed as

Bacterial ProteinsCholeraGene Expression Regulation, BacterialVibrio choleraeDNA-Binding ProteinsGene Transfer, HorizontalHumansTranscription, GeneticVirulenceVirulence FactorsBacterial ProteinsDNA-Binding ProteinsH-NS protein, bacteriaVirulence Factorsbacterial chromatingene regulationH-NSnucleoid-associated proteinsVibrio cholerae

Identifiers

PMID38920383
PMCPMC11288032

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.