Evidence map›Paper›PMID 38918616›Full record

ArticleNature biotechnology2025

In vivo AAV-SB-CRISPR screens of tumor-infiltrating primary NK cells identify genetic checkpoints of CAR-NK therapy.

Lei Peng, Paul A Renauer, Giacomo Sferruzza, Luojia Yang, Yongji Zou, Zhenghao Fang, Jonathan J Park, Ryan D Chow, Yueqi Zhang, Qianqian Lin and 6 more

Abstract read
In one paragraph

Article in Nature biotechnology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 36 papers.

0numbers the graph read from it
0cells of the map it votes in
36citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

36 citing papers in PubMed.

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  11. Engineering Immune Cell to Counteract Aging and Aging-Associated Diseases.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors.

Lei Peng *Department of Genetics, Yale University School of Medicine, New Haven, CT, USA.ORCID http://orcid.org/0000-0001-7159-5441
Paul A Renauer *Department of Genetics, Yale University School of Medicine, New Haven, CT, USA.
Giacomo SferruzzaDepartment of Genetics, Yale University School of Medicine, New Haven, CT, USA.
Luojia YangDepartment of Genetics, Yale University School of Medicine, New Haven, CT, USA.
Yongji ZouDepartment of Genetics, Yale University School of Medicine, New Haven, CT, USA.ORCID http://orcid.org/0009-0008-4380-4670
Zhenghao FangDepartment of Genetics, Yale University School of Medicine, New Haven, CT, USA.
Jonathan J ParkDepartment of Genetics, Yale University School of Medicine, New Haven, CT, USA.
Ryan D ChowDepartment of Genetics, Yale University School of Medicine, New Haven, CT, USA.
Yueqi ZhangDepartment of Genetics, Yale University School of Medicine, New Haven, CT, USA.
Qianqian LinDepartment of Genetics, Yale University School of Medicine, New Haven, CT, USA.ORCID http://orcid.org/0000-0002-9196-7692
Meizhu BaiDepartment of Genetics, Yale University School of Medicine, New Haven, CT, USA.
Angelica SanchezDepartment of Genetics, Yale University School of Medicine, New Haven, CT, USA.
Yongzhan ZhangDepartment of Genetics, Yale University School of Medicine, New Haven, CT, USA.
Stanley Z LamDepartment of Genetics, Yale University School of Medicine, New Haven, CT, USA.
Lupeng YeDepartment of Genetics, Yale University School of Medicine, New Haven, CT, USA. lupeng.ye@gmail.com.ORCID http://orcid.org/0000-0003-3901-6598
Sidi ChenDepartment of Genetics, Yale University School of Medicine, New Haven, CT, USA. sidi.chen@yale.edu.ORCID http://orcid.org/0000-0002-3819-5005

Funding

MEDICAL SCIENTIST TRAINING PROGRAMT32GM007205 · NIGMS · YALE UNIVERSITY · PI KAZMIERCZAK, BARBARA I · 1985 to 2019
$42.9M
PREDOCTORAL TRAINING PROGRAM IN GENETICST32GM007499 · NIGMS · YALE UNIVERSITY · PI CARLSON, JOHN R, REINKE, VALERIE J · 1985 to 2022
$13.9M
Yale Cancer Biology Training GrantT32CA193200 · NCI · YALE UNIVERSITY · PI PETER M GLAZER, Qin Yan · 2016 to 2026
$3.6M
(PQ4) Novel tools for in vivo study of genetic interactions in cancer progressionR01CA231112 · NCI · YALE UNIVERSITY · PI CHEN, SIDI · 2018 to 2022
$3.0M
High-throughput in vivo genetics for immunotherapy target discoveryDP2CA238295 · NCI · YALE UNIVERSITY · PI CHEN, SIDI · 2018 to 2018
$2.5M
Advanced development of composite gene delivery and CAR engineering systemsR33CA281702 · NCI · YALE UNIVERSITY · PI CHEN, SIDI · 2023 to 2025
$1.2M
Mechanosensation in tumorigenesis and metastasisF30CA250249 · NCI · YALE UNIVERSITY · PI CHOW, RYAN D · 2020 to 2022
$113k
NCI NIH HHS DP2 CA238295NCI NIH HHS F30 CA250249NCI NIH HHS R01 CA231112NCI NIH HHS R33 CA281702NCI NIH HHS T32 CA193200NIGMS NIH HHS T32 GM007205NIGMS NIH HHS T32 GM007499U.S. Department of Defense (United States Department of Defense) HT9425-23-1-0472U.S. Department of Defense (United States Department of Defense) W81XWH-21-1-0514U.S. Department of Health & Human Services | National Institutes of Health (NIH) R33CA281702U.S. Department of Health & Human Services | NIH | Center for Information Technology (Center for Information Technology, National Institutes of Health) DP2CA238295U.S. Department of Health & Human Services | NIH | Center for Information Technology (Center for Information Technology, National Institutes of Health) F30CA250249U.S. Department of Health & Human Services | NIH | Center for Information Technology (Center for Information Technology, National Institutes of Health) R01CA231112U.S. Department of Health & Human Services | NIH | Center for Information Technology (Center for Information Technology, National Institutes of Health) T32GM007205U.S. Department of Health & Human Services | NIH | Center for Information Technology (Center for Information Technology, National Institutes of Health) T32GM007499
6 · The paper itself

Abstract

Natural killer (NK) cells have clinical potential against cancer; however, multiple limitations hinder the success of NK cell therapy. Here, we performed unbiased functional mapping of tumor-infiltrating NK (TINK) cells using in vivo adeno-associated virus (AAV)-SB (Sleeping Beauty)-CRISPR (clustered regularly interspaced short palindromic repeats) screens in four solid tumor mouse models. In parallel, we characterized single-cell transcriptomic landscapes of TINK cells, which identified previously unexplored subpopulations of NK cells and differentially expressed TINK genes. As a convergent hit, CALHM2-knockout (KO) NK cells showed enhanced cytotoxicity and tumor infiltration in mouse primary NK cells and human chimeric antigen receptor (CAR)-NK cells. CALHM2 mRNA reversed the CALHM2-KO phenotype. CALHM2 KO in human primary NK cells enhanced their cytotoxicity, degranulation and cytokine production. Transcriptomics profiling revealed CALHM2-KO-altered genes and pathways in both baseline and stimulated conditions. In a solid tumor model resistant to unmodified CAR-NK cells, CALHM2-KO CAR-NK cells showed potent in vivo antitumor efficacy. These data identify endogenous genetic checkpoints that naturally limit NK cell function and demonstrate the use of CALHM2 KO for engineering enhanced NK cell-based immunotherapies.

Indexed as

Clustered Regularly Interspaced Short Palindromic RepeatsImmunotherapy, AdoptiveKiller Cells, NaturalLymphocytes, Tumor-InfiltratingNeoplasmsReceptors, Chimeric AntigenAnimalsCell Line, TumorDependovirusHumansMiceReceptors, Chimeric Antigen

Identifiers

PMID38918616
PMCPMC11668911

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.