Evidence map›Paper›PMID 38918379›Full record

ArticleNature communications2024

Beta-lactamase dependent and independent evolutionary paths to high-level ampicillin resistance.

Rotem Gross, Idan Yelin, Viktória Lázár, Manoshi Sen Datta, Roy Kishony

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Contributions of intra- and extracellular antibiotic degradation to collective [Formula: see text]-lactam survival.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  6. Article
  7. Article
  8. Review
  9. Article
  10. Review
  11. Article
  12. Review
  13. Article
  14. Review
  15. Tripartite Loops Reverse Antibiotic Resistance.Molecular biology and evolution · 2025
    Article
  16. Article
  17. Progression ofmBio · 2025
    Article
  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Rotem Gross *Faculty of Biology, Technion-Israel Institute of Technology, Haifa, Israel.ORCID 0000-0002-1888-046X
Idan Yelin *Faculty of Biology, Technion-Israel Institute of Technology, Haifa, Israel.
Viktória LázárFaculty of Biology, Technion-Israel Institute of Technology, Haifa, Israel.ORCID 0000-0002-9778-941X
Manoshi Sen DattaFaculty of Biology, Technion-Israel Institute of Technology, Haifa, Israel.
Roy KishonyFaculty of Biology, Technion-Israel Institute of Technology, Haifa, Israel. rkishony@technion.ac.il.ORCID 0000-0002-5013-5072

Funding

The population genetics of antibiotic resistance in multi-drug environmentsR01GM081617 · NIGMS · TECHNION-ISRAEL INSTITUTE OF TECHNOLOGY · PI KISHONY, ROY · 2007 to 2018
$3.7M
EC | EC Seventh Framework Programm | FP7 Ideas: European Research Council (FP7-IDEAS-ERC - Specific Programme: "Ideas" Implementing the Seventh Framework Programme of the European Community for Research, Technological Development and Demonstration Activities (2007 to 2013)) 281891Israel Science Foundation (ISF) 2790/19Israel Science Foundation (ISF) 455/19NIGMS NIH HHS R01 GM081617U.S. Department of Health & Human Services | NIH | National Institute of General Medical Sciences (NIGMS) R01-GM081617
6 · The paper itself

Abstract

The incidence of beta-lactam resistance among clinical isolates is a major health concern. A key method to study the emergence of antibiotic resistance is adaptive laboratory evolution. However, in the case of the beta-lactam ampicillin, bacteria evolved in laboratory settings do not recapitulate clinical-like resistance levels, hindering efforts to identify major evolutionary paths and their dependency on genetic background. Here, we used the Microbial Evolution and Growth Arena (MEGA) plate to select ampicillin-resistant Escherichia coli mutants with varying degrees of resistance. Whole-genome sequencing of resistant isolates revealed that ampicillin resistance was acquired via a combination of single-point mutations and amplification of the gene encoding beta-lactamase AmpC. However, blocking AmpC-mediated resistance revealed latent adaptive pathways: strains deleted for ampC were able to adapt through combinations of changes in genes involved in multidrug resistance encoding efflux pumps, transcriptional regulators, and porins. Our results reveal that combinations of distinct genetic mutations, accessible at large population sizes, can drive high-level resistance to ampicillin even independently of beta-lactamases.

Indexed as

AmpicillinAmpicillin ResistanceAnti-Bacterial AgentsBacterial Proteinsbeta-LactamasesEscherichia coliEvolution, MolecularMicrobial Sensitivity TestsMutationWhole Genome SequencingAmpC beta-lactamasesAmpicillinAnti-Bacterial AgentsBacterial Proteinsbeta-Lactamases

Identifiers

PMID38918379
PMCPMC11199616

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.