Evidence map›Paper›PMID 38915704›Full record

ArticlebioRxiv : the preprint server for biology2024

Interactive data exploration websites for large-scale electrophysiology.

Daniel Birman, Gaelle Chapuis, Mayo Faulkner, Cyrille Rossant, International Brain Laboratory, Julius Benson, Joana A Catarino, Anne K Churchland, Fei Hu, Julia M Huntenburg and 15 more

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

25 authors.

Daniel BirmanUniversity of Washington, USA.ORCID 0000-0003-3748-6289
Gaelle ChapuisUniversity of Geneva, Switzerland.ORCID 0000-0002-0269-7732
Mayo FaulknerUniversity College London, UK.ORCID 0000-0001-5427-0282
Cyrille RossantUniversity College London, UK.ORCID 0000-0003-2069-9093
International Brain Laboratory
Julius BensonNew York University, USA.ORCID 0000-0001-7877-5939
Joana A CatarinoChampalimaud Foundation, Portugal.ORCID 0000-0001-8761-5531
Anne K ChurchlandUniversity of California Los Angeles, USA.ORCID 0000-0002-3205-3794
Fei HuUniversity of California Berkeley, USA.ORCID 0000-0001-7827-9548
Julia M HuntenburgMax Planck Institute, Germany.ORCID 0000-0003-0579-9811
Anup KhanalUniversity of California Los Angeles, USA.ORCID 0000-0002-8929-7984
Christopher KrasniakCold Spring Harbor Laboratory, USA.ORCID 0000-0001-8852-6805
Petrina Y P LauNew York University, USA.ORCID 0000-0003-2257-2344
Guido T MeijerChampalimaud Foundation, Portugal.ORCID 0000-0002-7473-0482
Nathaniel J MiskaSainsbury Wellcome Center, UK.ORCID 0000-0001-8587-4919
Jean-Paul NoelNew York University, USA.ORCID 0000-0001-5297-3363
Alejandro Pan-VazquezPrinceton University, USA.ORCID 0000-0001-5899-0471
Noam RothUniversity of Washington, USA.ORCID 0000-0002-0168-0103
Michael SchartnerChampalimaud Foundation, Portugal.ORCID 0000-0002-4854-3034
Karolina Z SochaUniversity College London, UK.ORCID 0000-0002-1677-1489
Nicholas A SteinmetzUniversity of Washington, USA.ORCID 0000-0001-7029-2908
Anne E UraiLeiden University, The Netherlands.ORCID 0000-0001-5270-6513
Miles J WellsUniversity College London, UK.ORCID 0000-0003-4014-2591
Steven J WestUniversity College London, UK.ORCID 0000-0002-2413-0999
Olivier WinterChampalimaud Foundation, Portugal.ORCID 0000-0001-9278-2721

Funding

State-dependent Decision-making in Brainwide Neural CircuitsU19NS123716 · NINDS · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI CHURCHLAND, ANNE KATHRYN, PANINSKI, LIAM M · 2021 to 2025
$18.2M
NINDS NIH HHS U19 NS123716Wellcome Trust
6 · The paper itself

Abstract

Methodological advances in neuroscience have enabled the collection of massive datasets which demand innovative approaches for scientific communication. Existing platforms for data storage lack intuitive tools for data exploration, limiting our ability to interact effectively with these brain-wide datasets. We introduce two public websites: (Data and Atlas) developed for the International Brain Laboratory which provide access to millions of behavioral trials and hundreds of thousands of individual neurons. These interfaces allow users to discover both the raw and processed brain-wide data released by the IBL at the scale of the whole brain, individual sessions, trials, and neurons. By hosting these data interfaces as websites they are available cross-platform with no installation. By releasing each site's code as a modular open-source framework, other researchers can easily develop their own web interfaces and explore their own data. As neuroscience datasets continue to expand, customizable web interfaces offer a glimpse into a future of streamlined data exploration and act as blueprints for future tools.

Identifiers

PMID38915704
PMCPMC11195081

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.