Evidence map›Paper›PMID 38915582›Full record

ArticlebioRxiv : the preprint server for biology2024

Transport and Organization of Individual Vimentin Filaments Within Dense Networks Revealed by Single Particle Tracking and 3D FIB-SEM.

Bhuvanasundar Renganathan, Andrew Moore, Wei-Hong Yeo, Alyson Petruncio, David Ackerman, Aubrey Wiegel, CellMap Team, H Amalia Pasolli, C Shan Xu, Gleb Shtengel and 5 more

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

15 authors.

Bhuvanasundar RenganathanDepartment of Cell and Developmental Biology, Feinberg School of Medicine, Northwestern University, Chicago, IL 60611, USA.ORCID 0000-0003-1878-3739
Andrew MooreJanelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA 20147, USA.
Wei-Hong YeoDepartment of Biomedical Engineering, Northwestern University, Evanston, IL 60201, USA.
Alyson PetruncioJanelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA 20147, USA.
David AckermanJanelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA 20147, USA.
Aubrey WiegelJanelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA 20147, USA.
CellMap Team
H Amalia PasolliElectron Microscopy Resource Center, Rockefeller University, New York, NY 10021, USA.
C Shan XuDepartment of Cellular and Molecular Physiology, Yale School of Medicine, Yale University, New Haven, CT 06520, USA.
Gleb ShtengelJanelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA 20147, USA.
Harald F HessJanelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA 20147, USA.
Anna S SerpinskayaDepartment of Cell and Developmental Biology, Feinberg School of Medicine, Northwestern University, Chicago, IL 60611, USA.
Hao F ZhangDepartment of Biomedical Engineering, Northwestern University, Evanston, IL 60201, USA.
Jennifer Lippincott-SchwartzJanelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA 20147, USA.
Vladimir I GelfandDepartment of Cell and Developmental Biology, Feinberg School of Medicine, Northwestern University, Chicago, IL 60611, USA.ORCID 0000-0002-6361-2798

Funding

Technology Development UnitU54CA268084 · NCI · NORTHWESTERN UNIVERSITY · PI Daniela E Matei · 2022 to 2026
$10.0M
Microtubule motors, cytoskeletal organization and cell polarityR35GM131752 · NIGMS · NORTHWESTERN UNIVERSITY AT CHICAGO · PI Vladimir I Gelfand · 2019 to 2026
$6.4M
Intrinsic-contrast super-resolution imaging of DNA at 2-nm resolutionR01GM139151 · NIGMS · NORTHWESTERN UNIVERSITY · PI ZHANG, HAO F · 2020 to 2023
$1.3M
Development of spectroscopic Single-Molecule Localization MicroscopyR01GM140478 · NIGMS · NORTHWESTERN UNIVERSITY · PI SUN, CHENG, ZHANG, HAO F · 2021 to 2024
$1.2M
NCI NIH HHS U54 CA268084NIGMS NIH HHS R01 GM139151NIGMS NIH HHS R01 GM140478NIGMS NIH HHS R35 GM131752
6 · The paper itself

Abstract

Single-particle tracking demonstrates that individual filaments in bundles of vimentin intermediate filaments are transported in the cytoplasm by motor proteins along microtubules. Furthermore, using 3D FIB-SEM the authors showed that vimentin filament bundles are loosely packed and coaligned with microtubules. Vimentin intermediate filaments (VIFs) form complex, tight-packed networks; due to this density, traditional ensemble labeling and imaging approaches cannot accurately discern single filament behavior. To address this, we introduce a sparse vimentin-SunTag labeling strategy to unambiguously visualize individual filament dynamics. This technique confirmed known long-range dynein and kinesin transport of peripheral VIFs and uncovered extensive bidirectional VIF motion within the perinuclear vimentin network, a region we had thought too densely bundled to permit such motility. To examine the nanoscale organization of perinuclear vimentin, we acquired high-resolution electron microscopy volumes of a vitreously frozen cell and reconstructed VIFs and microtubules within a ~50 μm

Identifiers

PMID38915582
PMCPMC11195130

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.