Evidence map›Paper›PMID 38915458›Full record

ArticleMolecular biology research communications2024

Genome-wide mining and characterization of MATE transporters in Coriandrum sativum L.

Deepu Mathew, Ravisankar Valsalan, M Shijili

Abstract read
In one paragraph

Article in Molecular biology research communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

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2 · The registry

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Review
  2. Article
  3. Plants (Basel, Switzerland) · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Deepu MathewBioinformatics Centre, Kerala Agricultural University, Thrissur-680 656, India.
Ravisankar ValsalanBioinformatics Centre, Kerala Agricultural University, Thrissur-680 656, India.
M ShijiliBioinformatics Centre, Kerala Agricultural University, Thrissur-680 656, India.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Multidrug and Toxic Compound Extrusion (MATE) proteins are responsible for the transport of a wide range of metabolites out of plant cells. This helps to protect the cells from toxins and other harmful compounds. MATE proteins also play a role in plant development, by regulating the transport of hormones and other signalling molecules. They transport a wide variety of substances, including organic acids, plant hormones, flavonoids, alkaloids, terpenes and other secondary metabolites. MATE proteins are thought to play similar roles in Coriander, in addition to stress responses. The MATE genes in the coriander genome have been identified and characterized. Detailed genome homology search and domain identification analysis have identified 91 MATE proteins in the genome assembly of coriander. A phylogenetic analysis of the identified proteins divided them into five major clades. The functions of the transporters in each cluster were predicted based on the clustering pattern of the functionally characterized proteins. The amino acid sequences, exon-intron structures and motif details of all the 91 proteins are identified and described. This is the first work on the MATE transporters in coriander and the results deliver clues for the molecular mechanisms behind the stress responses and secondary metabolite transport in coriander.

Indexed as

CorianderGenome annotationHomeostasisMultidrug and Toxic Compound ExtrusionTransport protein

Identifiers

PMID38915458
PMCPMC11194028

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