Evidence map›Paper›PMID 38915364›Full record

ReviewFrontiers in oncology2024

Long-read sequencing for brain tumors.

William J Shelton, Sara Zandpazandi, J Stephen Nix, Murat Gokden, Michael Bauer, Katie Rose Ryan, Christopher P Wardell, Olena Morozova Vaske, Analiz Rodriguez

Abstract readReview
In one paragraph

Review in Frontiers in oncology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Review
  2. Article
  3. Antibody-conjugated polymer nanoparticles for brain cancer.Drug delivery and translational research · 2025
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

William J SheltonDepartment of Neurosurgery, College of Medicine, University of Arkansas for Medical Sciences, Little Rock, AR, United States.
Sara ZandpazandiDepartment of Neurosurgery, Medical University of South Carolina, Charleston, SC, United States.
J Stephen NixDepartment of Pathology, University of Arkansas for Medical Sciences, Little Rock, AR, United States.
Murat GokdenDepartment of Pathology, University of Arkansas for Medical Sciences, Little Rock, AR, United States.
Michael BauerDepartment of Biomedical Informatics, University of Arkansas for Medical Sciences, Little Rock, AR, United States.
Katie Rose RyanDepartment of Biochemistry and Molecular Biology, University of Arkansas for Medical Sciences, Little Rock, AR, United States.
Christopher P WardellDepartment of Biomedical Informatics, University of Arkansas for Medical Sciences, Little Rock, AR, United States.
Olena Morozova VaskeDepartment of Molecular, Cell and Developmental Biology, University of California Santa Cruz, Santa Cruz, CA, United States.
Analiz RodriguezDepartment of Neurosurgery, College of Medicine, University of Arkansas for Medical Sciences, Little Rock, AR, United States.

Funding

Unraveling DNA Polymerase Double-Strand Break Repair Strategies in CancerP20GM152281 · NIGMS · UNIV OF ARKANSAS FOR MED SCIS · PI Katie Rose Ryan · 2024 to 2026
$9.2M
6 · The paper itself

Abstract

Brain tumors and genomics have a long-standing history given that glioblastoma was the first cancer studied by the cancer genome atlas. The numerous and continuous advances through the decades in sequencing technologies have aided in the advanced molecular characterization of brain tumors for diagnosis, prognosis, and treatment. Since the implementation of molecular biomarkers by the WHO CNS in 2016, the genomics of brain tumors has been integrated into diagnostic criteria. Long-read sequencing, also known as third generation sequencing, is an emerging technique that allows for the sequencing of longer DNA segments leading to improved detection of structural variants and epigenetics. These capabilities are opening a way for better characterization of brain tumors. Here, we present a comprehensive summary of the state of the art of third-generation sequencing in the application for brain tumor diagnosis, prognosis, and treatment. We discuss the advantages and potential new implementations of long-read sequencing into clinical paradigms for neuro-oncology patients.

Indexed as

brain tumorsliquid biopsylong-read sequencingmolecular diagnosticsthird generation sequencing

Identifiers

PMID38915364
PMCPMC11194609

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.