Evidence map›Paper›PMID 38914786›Full record

ReviewNature cell biology2024

Intertwining roles of R-loops and G-quadruplexes in DNA repair, transcription and genome organization.

Phillip Wulfridge, Kavitha Sarma

Abstract readReview
In one paragraph

Review in Nature cell biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 41 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
41citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

41 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
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  6. G-Quadruplexes: Structural Diversity and Emerging Roles in Biomolecular Condensation.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Phillip WulfridgeGene Expression and Regulation Program, The Wistar Institute, Philadelphia, PA, USA.
Kavitha SarmaGene Expression and Regulation Program, The Wistar Institute, Philadelphia, PA, USA. kavitha@sarmalab.com.ORCID http://orcid.org/0000-0002-3045-210X

Funding

CTCF-dependent mechanisms of ATRX in neuronal differentiationR01NS127828 · NINDS · WISTAR INSTITUTE · PI Kavitha Sarma · 2022 to 2026
$2.6M
ADNP mechanisms in R-loop regulation during differentiationR01GM143229 · NIGMS · WISTAR INSTITUTE · PI SARMA, KAVITHA · 2022 to 2025
$1.7M
Epigenetic Pathways in ATRX-Mediated CTCF RegulationF32GM143832 · NIGMS · WISTAR INSTITUTE · PI WULFRIDGE, PHILLIP · 2021 to 2021
$66k
NIGMS NIH HHS F32 GM143832NIGMS NIH HHS R01 GM143229NINDS NIH HHS R01 NS127828U.S. Department of Health & Human Services | National Institutes of Health (NIH) F32GM143832U.S. Department of Health & Human Services | National Institutes of Health (NIH) R01GM143229U.S. Department of Health & Human Services | National Institutes of Health (NIH) R01NS127828
6 · The paper itself

Abstract

R-loops are three-stranded nucleic acid structures that are abundant and widespread across the genome and that have important physiological roles in many nuclear processes. Their accumulation is observed in cancers and neurodegenerative disorders. Recent studies have implicated a function for R-loops and G-quadruplex (G4) structures, which can form on the displaced single strand of R-loops, in three-dimensional genome organization in both physiological and pathological contexts. Here we discuss the interconnected functions of DNA:RNA hybrids and G4s within R-loops, their impact on DNA repair and gene regulatory networks, and their emerging roles in genome organization during development and disease.

Indexed as

DNA RepairG-QuadruplexesR-Loop StructuresTranscription, GeneticAnimalsDNAGene Regulatory NetworksGenomeHumansNeoplasmsRNADNARNA

Identifiers

PMID38914786
PMCPMC12044674

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.