Evidence map›Paper›PMID 38914600›Full record

ArticleScientific reports2024

RNAi-mediated downregulation of AcCENH3 can induce in vivo haploids in onion (Allium cepa L.).

Tushar K Manape, Viswanathan Satheesh, Saravanakumar Somasundaram, Parakkattu S Soumia, Yogesh P Khade, Pawan Mainkar, Vijay Mahajan, Major Singh, Sivalingam Anandhan

Abstract read
In one paragraph

Article in Scientific reports, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed.

  1. Inducing haploids in rice through OsCENH3 modulation.Science China. Life sciences · 2026
    Article
  2. Article
  3. Review
  4. Centromeres drive and take a break.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2025
    Review
  5. Article
  6. Forage Crop Research in the Modern Age.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2025
    Review
  7. Haploid Production inBiology · 2025
    Review
  8. Review
  9. Review
  10. Pioneers of chromosome elimination.Frontiers in epigenetics and epigenomics · 2025
    Article
  11. Recent Progress on Plant Apomixis for Genetic Improvement.International journal of molecular sciences · 2024
    Review
  12. Review
  13. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Tushar K ManapeICAR-Directorate of Onion and Garlic Research, Rajgurunagar, Pune, Maharashtra, 410505, India.
Viswanathan SatheeshICAR-National Institute of Plant Biotechnology, Pusa Campus, New Delhi, 110012, India.
Saravanakumar SomasundaramICAR-Directorate of Onion and Garlic Research, Rajgurunagar, Pune, Maharashtra, 410505, India.
Parakkattu S SoumiaICAR-Directorate of Onion and Garlic Research, Rajgurunagar, Pune, Maharashtra, 410505, India.
Yogesh P KhadeICAR-Directorate of Onion and Garlic Research, Rajgurunagar, Pune, Maharashtra, 410505, India.
Pawan MainkarICAR-Directorate of Onion and Garlic Research, Rajgurunagar, Pune, Maharashtra, 410505, India.
Vijay MahajanICAR-Directorate of Onion and Garlic Research, Rajgurunagar, Pune, Maharashtra, 410505, India.
Major SinghICAR-Directorate of Onion and Garlic Research, Rajgurunagar, Pune, Maharashtra, 410505, India.
Sivalingam AnandhanICAR-Directorate of Onion and Garlic Research, Rajgurunagar, Pune, Maharashtra, 410505, India. anandhans@gmail.com.

Funding

Indian Council of Agricultural Research under the ICAR National Fellow project HORTDOGRSOL201700800088
6 · The paper itself

Abstract

Haploid induction (HI) holds great promise in expediting the breeding process in onion, a biennial cross-pollinated crop. We used the CENH3-based genome elimination technique in producing a HI line in onion. Here, we downregulated AcCENH3 using the RNAi approach without complementation in five independent lines. Out of five events, only three could produce seeds upon selfing. The progenies showed poor seed set and segregation distortion, and we were unable to recover homozygous knockdown lines. The knockdown lines showed a decrease in accumulation of AcCENH3 transcript and protein in leaf tissue. The decrease in protein content in transgenic plants was correlated with poor seed set. When the heterozygous knockdown lines were crossed with wild-type plants, progenies showed HI by genome elimination of the parental chromosomes from AcCENH3 knockdown lines. The HI efficiency observed was between 0 and 4.63% in the three events, and it was the highest (4.63%) when E1 line was crossed with wildtype. Given the importance of doubled haploids in breeding programmes, the findings from our study are poised to significantly impact onion breeding.

Indexed as

Gene Expression Regulation, PlantHaploidyOnionsPlant ProteinsPlants, Genetically ModifiedRNA InterferenceDown-RegulationGene Knockdown TechniquesPlant BreedingPlant ProteinsCentromere specific histone3Genome eliminationSegregation distortion and haploid induction

Identifiers

PMID38914600
PMCPMC11196721

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.