Evidence map›Paper›PMID 38912279›Full record

ArticleJuntendo Iji zasshi = Juntendo medical journal2022

Molecular Epidemiology and Comparative Genome Analysis of Clinically-isolated MRSA Strains in Indonesia.

Firman Setiawan, Tadashi Baba, Yuh Morimoto, Yosuke Nakagawa, Ryotaro Shimogami, Teruo Kirikae, Keiichi Hiramatsu

Abstract read
In one paragraph

Article in Juntendo Iji zasshi = Juntendo medical journal, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Firman Setiawan
Tadashi Baba
Yuh Morimoto
Yosuke Nakagawa
Ryotaro Shimogami
Teruo Kirikae
Keiichi Hiramatsu

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Objective: Most strains of methicillin-resistant Materials: Of 45 MRSA strains isolated in Surabaya, 10 were selected by antibiotic resistance patterns and clinical features, while excluding duplicates. Methods: Whole genome sequencing was performed using a next-generation sequencer, and the complete genome sequence of one of these 10 strains was also determined by the PacBio system. The strains were subjected to molecular epidemiological analyses, including the presence of drug-resistance and virulence-related genes, the determination of sequence types and staphylococcal cassette chromosome Results: The molecular types of these MRSA strains showed significant diversity. Complete sequencing of the genome of strain IDSA1 showed that it belonged to the ST239 group, while also having unique mobile genetic elements. Conclusions: Despite the small number of MRSA strains collected in a limited area and over a short period of time, these strains were found to have arisen in many other regions of the world, suggesting that they had migrated into Indonesia through human movement. These strains also showed molecular differentiation after migrating into Indonesia.

Indexed as

Complete genome determinationIndonesiaMethicillin-resistance Staphylococcus aureus (MRSA)Staphylococcal cassette chromosome mec (SCCmec)

Identifiers

PMID38912279
PMCPMC11189795

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.