Evidence map›Paper›PMID 38909236›Full record

ArticleEnvironmental microbiome2024

Metagenomic insights into Heimdallarchaeia clades from the deep-sea cold seep and hydrothermal vent.

Rui Liu, Ruining Cai, Minxiao Wang, Jing Zhang, Huan Zhang, Chaolun Li, Chaomin Sun

Abstract read
In one paragraph

Article in Environmental microbiome, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Rui LiuCAS and Shandong Province Key Laboratory of Experimental Marine Biology, Institute of Oceanology, Chinese Academy of Sciences, Qingdao, China.
Ruining CaiCAS and Shandong Province Key Laboratory of Experimental Marine Biology, Institute of Oceanology, Chinese Academy of Sciences, Qingdao, China.
Minxiao WangCenter of Deep Sea Research, Institute of Oceanology, Chinese Academy of Sciences, Qingdao, China.
Jing ZhangCAS and Shandong Province Key Laboratory of Experimental Marine Biology, Institute of Oceanology, Chinese Academy of Sciences, Qingdao, China.
Huan ZhangCenter of Deep Sea Research, Institute of Oceanology, Chinese Academy of Sciences, Qingdao, China.
Chaolun LiCenter of Deep Sea Research, Institute of Oceanology, Chinese Academy of Sciences, Qingdao, China. lcl@qdio.ac.cn.
Chaomin SunCAS and Shandong Province Key Laboratory of Experimental Marine Biology, Institute of Oceanology, Chinese Academy of Sciences, Qingdao, China. sunchaomin@qdio.ac.cn.

Funding

China Ocean Mineral Resources R&D Association Grant DY135-B2-14Key Collaborative Research Program of the Alliance of International Science Organizations ANSO-CR-KP-2022-08Key deployment projects of Center of Ocean Mega-Science of the Chinese Academy of Sciences COMS2020Q04Major Research Plan of the National Natural Science Foundation No. 92051107; 92351301NSFC Innovative Group Grant 42221005Open Research Project of National Major Science & Technology Infrastructure (RV KEXUE) NMSTI-KEXUE2017K01Science and Technology Innovation Project of Laoshan Laboratory No. LSKJ202203103; 2022QNLM030004-3Shandong Provincial Natural Science Foundation ZR2021ZD28Strategic Priority Research Program of the Chinese Academy of Sciences XDA22050301Taishan Scholars Program tstp2023063
6 · The paper itself

Abstract

Heimdallarchaeia is a class of the Asgardarchaeota, are the most probable candidates for the archaeal protoeukaryote ancestor that have been identified to date. However, little is known about their life habits regardless of their ubiquitous distribution in diverse habitats, which is especially true for Heimdallarchaeia from deep-sea environments. In this study, we obtained 13 metagenome-assembled genomes (MAGs) of Heimdallarchaeia from the deep-sea cold seep and hydrothermal vent. These MAGs belonged to orders o_Heimdallarchaeales and o_JABLTI01, and most of them (9 MAGs) come from the family f_Heimdallarchaeaceae according to genome taxonomy database (GTDB). These are enriched for common eukaryote-specific signatures. Our results show that these Heimdallarchaeia have the metabolic potential to reduce sulfate (assimilatory) and nitrate (dissimilatory) to sulfide and ammonia, respectively, suggesting a previously unappreciated role in biogeochemical cycling. Furthermore, we find that they could perform both TCA and rTCA pathways coupled with pyruvate metabolism for energy conservation, fix CO

Indexed as

Cold seepHeimdallarchaeiaHydrothermal ventLight-sensingMetabolism pathwayMicrooxic lifestyle

Identifiers

PMID38909236
PMCPMC11193907

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.