Evidence map›Paper›PMID 38908376›Full record

ArticleStructure (London, England : 1993)2024

Structural insights into the role and targeting of EGFRvIII.

Atrish Bagchi, Steven E Stayrook, Katerina T Xenaki, Chrystal A Starbird, Sofia Doulkeridou, Rachid El Khoulati, Rob C Roovers, Karl R Schmitz, Paul M P van Bergen En Henegouwen, Kathryn M Ferguson

Abstract read
In one paragraph

Article in Structure (London, England : 1993), 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Atrish BagchiGraduate Group in Biochemistry and Molecular Biophysics, University of Pennsylvania, Philadelphia, PA 19104, USA.
Steven E StayrookDepartment of Pharmacology, Yale University School of Medicine, New Haven, CT 06520, USA; Yale Cancer Biology Institute, Yale University West Campus, West Haven, CT 06516, USA.
Katerina T XenakiDivision of Cell Biology, Neurobiology and Biophysics, Department of Biology, Science Faculty, Utrecht University, Utrecht 3584CH, the Netherlands.
Chrystal A StarbirdDepartment of Pharmacology, Yale University School of Medicine, New Haven, CT 06520, USA; Yale Cancer Biology Institute, Yale University West Campus, West Haven, CT 06516, USA.
Sofia DoulkeridouDivision of Cell Biology, Neurobiology and Biophysics, Department of Biology, Science Faculty, Utrecht University, Utrecht 3584CH, the Netherlands.
Rachid El KhoulatiDivision of Cell Biology, Neurobiology and Biophysics, Department of Biology, Science Faculty, Utrecht University, Utrecht 3584CH, the Netherlands.
Rob C RooversDivision of Cell Biology, Neurobiology and Biophysics, Department of Biology, Science Faculty, Utrecht University, Utrecht 3584CH, the Netherlands.
Karl R SchmitzDepartment of Biological Sciences, University of Delaware, Newark, DE, USA.
Paul M P van Bergen En HenegouwenDivision of Cell Biology, Neurobiology and Biophysics, Department of Biology, Science Faculty, Utrecht University, Utrecht 3584CH, the Netherlands.
Kathryn M FergusonDepartment of Pharmacology, Yale University School of Medicine, New Haven, CT 06520, USA; Yale Cancer Biology Institute, Yale University West Campus, West Haven, CT 06516, USA. Electronic address: kathryn.ferguson@yale.edu.

Funding

STRUCTURAL BIOLOGY TRAINING PROGRAMT32GM008275 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI WAND, A. JOSHUA · 1988 to 2018
$6.0M
Understanding EGF receptor activation by growth factors and oncogenic mutationsR01CA198164 · NCI · YALE UNIVERSITY · PI FERGUSON, KATHRYN M, LEMMON, MARK A · 2015 to 2024
$5.2M
Analysis of active and inactive EGFR conformationsR01CA112552 · NCI · YALE UNIVERSITY · PI FERGUSON, KATHRYN M · 2005 to 2015
$2.4M
The Structural Basis of TAM Receptor Oligomerizarion and Co-receptor InteractionsR00GM144683 · NIGMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI STARBIRD, CHRYSTAL · 2023 to 2025
$740k
The Structural Basis of TAM Receptor Oligomerizarion and Co-receptor InteractionsK99GM144683 · NIGMS · YALE UNIVERSITY · PI STARBIRD, CHRYSTAL · 2022 to 2022
$97k
NCI NIH HHS R01 CA112552NCI NIH HHS R01 CA198164NIGMS NIH HHS K99 GM144683NIGMS NIH HHS R00 GM144683NIGMS NIH HHS T32 GM008275
6 · The paper itself

Abstract

The epidermal growth factor receptor (EGFR) is a well-known oncogenic driver in lung and other cancers. In glioblastoma multiforme (GBM), the EGFR deletion variant III (EGFRvIII) is frequently found alongside EGFR amplification. Agents targeting the EGFR axis have shown limited clinical benefits in GBM and the role of EGFRvIII in GBM is poorly understood. To shed light on the role of EGFRvIII and its potential as a therapeutic target, we determined X-ray crystal structures of a monomeric EGFRvIII extracellular region (ECR). The EGFRvIII ECR resembles the unliganded conformation of EGFR, including the orientation of the C-terminal region of domain II. Domain II is mostly disordered, but the ECR structure is compact. We selected a nanobody with preferential binding to EGFRvIII relative to EGFR and structurally defined an epitope on domain IV that is occluded in the unliganded intact EGFR. These findings suggest new avenues for EGFRvIII targeting in GBM.

Indexed as

ErbB ReceptorsProtein BindingSingle-Domain AntibodiesBinding SitesCrystallography, X-RayGlioblastomaHumansModels, MolecularProtein DomainsEGFR protein, humanepidermal growth factor receptor VIIIErbB ReceptorsSingle-Domain Antibodiesepidermal growth factor receptorepidermal growth factor receptor variant IIIglioblastoma multiformenanobodyoncogenic mutationVHH domainX-ray crystallography

Identifiers

PMID38908376
PMCPMC11380598

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.