Evidence map›Paper›PMID 38908027›Full record

ArticleNucleic acids research2024

Phase-separated ParB enforces diverse DNA compaction modes and stabilizes the parS-centered partition complex.

Yilin Zhao, Lijuan Guo, Jiaojiao Hu, Zhiyun Ren, Yanan Li, Meng Hu, Xia Zhang, Lulu Bi, Dan Li, Hanhui Ma and 2 more

Abstract read
In one paragraph

Article in Nucleic acids research, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Yilin ZhaoSchool of Life Science and Technology, ShanghaiTech University, Shanghai 201210, China.
Lijuan GuoSchool of Life Science and Technology, ShanghaiTech University, Shanghai 201210, China.
Jiaojiao HuInterdisciplinary Research Center on Biology and Chemistry, Shanghai Institute of Organic Chemistry, Chinese Academy of Sciences, Shanghai 201210, China.
Zhiyun RenSchool of Life Science and Technology, ShanghaiTech University, Shanghai 201210, China.
Yanan LiSchool of Life Science and Technology, ShanghaiTech University, Shanghai 201210, China.ORCID 0000-0003-3661-8729
Meng HuSchool of Life Science and Technology, ShanghaiTech University, Shanghai 201210, China.
Xia ZhangSchool of Life Science and Technology, ShanghaiTech University, Shanghai 201210, China.
Lulu BiSchool of Life Science and Technology, ShanghaiTech University, Shanghai 201210, China.
Dan LiBio-X Institutes, Key Laboratory for the Genetics of Developmental and Neuropsychiatric Disorders, Ministry of Education, Shanghai Jiao Tong University, Shanghai 200240, China.
Hanhui MaSchool of Life Science and Technology, ShanghaiTech University, Shanghai 201210, China.ORCID 0000-0002-4788-2106
Cong LiuInterdisciplinary Research Center on Biology and Chemistry, Shanghai Institute of Organic Chemistry, Chinese Academy of Sciences, Shanghai 201210, China.
Bo SunSchool of Life Science and Technology, ShanghaiTech University, Shanghai 201210, China.ORCID 0000-0002-4590-7795

Funding

CAS Project for Young Scientists in Basic Research YSBR-095National Natural Science Foundation of China 32271505Natural Science Foundation of Shanghai 22ZR1441900Science and Technology Commission of Shanghai Municipality 22JC1410400Shanghai Pilot Program for Basic Research - Chinese Academy of Science, Shanghai Branch CYJ-SHFY-2022-005
6 · The paper itself

Abstract

The tripartite ParABS system mediates chromosome segregation in the majority of bacterial species. Typically, DNA-bound ParB proteins around the parS sites condense the chromosomal DNA into a higher-order multimeric nucleoprotein complex for the ParA-driven partition. Despite extensive studies, the molecular mechanism underlying the dynamic assembly of the partition complex remains unclear. Herein, we demonstrate that Bacillus subtilis ParB (Spo0J), through the multimerization of its N-terminal domain, forms phase-separated condensates along a single DNA molecule, leading to the concurrent organization of DNA into a compact structure. Specifically, in addition to the co-condensation of ParB dimers with DNA, the engagement of well-established ParB condensates with DNA allows for the compression of adjacent DNA and the looping of distant DNA. Notably, the presence of CTP promotes the formation of condensates by a low amount of ParB at parS sites, triggering two-step DNA condensation. Remarkably, parS-centered ParB-DNA co-condensate constitutes a robust nucleoprotein architecture capable of withstanding disruptive forces of tens of piconewton. Overall, our findings unveil diverse modes of DNA compaction enabled by phase-separated ParB and offer new insights into the dynamic assembly and maintenance of the bacterial partition complex.

Indexed as

Bacillus subtilisBacterial ProteinsDNA, BacterialChromosomes, BacterialChromosome SegregationDNA-Binding ProteinsNucleic Acid ConformationProtein MultimerizationBacterial ProteinsDNA, BacterialDNA-Binding Proteinsspore-specific proteins, Bacillus

Identifiers

PMID38908027
PMCPMC11317135

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.