Evidence map›Paper›PMID 38907845›Full record

ArticleTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik2024

Genome-wide association study and linkage mapping reveal TaqW-6B associated with water-extractable arabinoxylan content in wheat grain.

Qiong Li, Zhankui Zeng, Yue Zhao, Jiachuang Li, Feng Chen, Chunping Wang

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Article in TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

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2citing papers in PubMed
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1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

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3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Identification of TaqW-6AS, a novel gene controlling WE-AX content in wheat grain.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2025
    Article
4 · The record

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5 · Who and what money

Authors and funding

6 authors.

Qiong Li *College of Agronomy/Engineering Research Center for Utilization of Dryland Crop Germplasm Resources, Henan University of Science and Technology, Luoyang, 471000, Henan, China.
Zhankui Zeng *College of Agronomy/Engineering Research Center for Utilization of Dryland Crop Germplasm Resources, Henan University of Science and Technology, Luoyang, 471000, Henan, China.
Yue ZhaoCollege of Agronomy/Engineering Research Center for Utilization of Dryland Crop Germplasm Resources, Henan University of Science and Technology, Luoyang, 471000, Henan, China.
Jiachuang LiCollege of Agronomy/Engineering Research Center for Utilization of Dryland Crop Germplasm Resources, Henan University of Science and Technology, Luoyang, 471000, Henan, China.
Feng ChenCollege of Agronomy/National Key Laboratory of Wheat and Maize Crop Science/Collaborative Innovation Center of Henan Grain Crops, Henan Agricultural University, Longzihu College District, Zhengzhou, 450046, China. chf0088@163.com.
Chunping WangCollege of Agronomy/Engineering Research Center for Utilization of Dryland Crop Germplasm Resources, Henan University of Science and Technology, Luoyang, 471000, Henan, China. chunpingw@haust.edu.cn.ORCID http://orcid.org/0000-0002-9594-7699

Funding

Major Science and Technology Projects in Henan Province 231100110300Natural Science Foundation of Henan 232300420200Shennong Laboratory SN01-2022-01
6 · The paper itself

Abstract

key messageA novel QTL, TaqW-6B of water-extractable arabinoxylan content in the wheat grain on chromosome 6BL was identified and fine mapped in a narrow region 3.8 Mb. Water-extractable arabinoxylan (WE-AX), an important component of hemicellulose, is associated with various abundant health benefits. In this study, QTLs for WE-AX content were detected in two populations: (1) a recombinant inbred line (RIL) population with 164 lines derived from a cross between Avocet and Chilero (AC population) genotyped with diversity array technology (DArT), and (2) a natural population of 243 varieties (CH population) genotyped with the Axiom wheat 660 K single-nucleotide polymorphism (SNP) array. A stable QTL Qwe-ax.haust-6B, explaining 8.51-15.59% of the phenotypic variance, was mapped in the physical interval 459.38-572.09 Mb on the long arm of chromosome 6B in the AC population, tightly linked with DArT markers 3,944,740 and 4,991,038 under three experimental conditions. The Qwe-ax.haust-6B was further narrowed down to be delimited in the physical interval 516.47-571.58 Mb on chromosome 6BL, explaining 5.86-16.27% of the phenotypic variance in the CH population. Furthermore, we developed high-throughput kompetitive allele-specific PCR (KASP) markers to reconstruct the genetic linkage map in the AC population, and Qwe-ax.haust-6B was fine mapped into a narrow region named TaqW-6B, which was compressed between KASP-6B-3 and KASP-6B-6 at a physical distance of 3.8 Mb. In the meanwhile, the markers were also validated in a natural population of 160 wheat lines (NP population). Consequently, this study is of great importance to provide the theoretical basis for cloning the key gene and developing functional markers for molecular breeding.

Indexed as

Chromosome MappingPhenotypePolymorphism, Single NucleotideQuantitative Trait LociTriticumXylansChromosomes, PlantEdible GrainGenetic Association StudiesGenetic LinkageGenetic MarkersGenome-Wide Association StudyGenotypearabinoxylanGenetic MarkersXylans

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.