Evidence map›Paper›PMID 38907313›Full record

ArticleGenomics & informatics2024

Dispersion of SARS-CoV-2 lineage BA.5.1.25 and its descendants in Peru during two COVID-19 waves in 2022.

Victor Jimenez-Vasquez, Natalia Vargas-Herrera, Luis Bárcena-Flores, Verónica Hurtado, Carlos Padilla-Rojas, Roger V Araujo-Castillo

Abstract read
In one paragraph

Article in Genomics & informatics, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Victor Jimenez-VasquezCentro Nacional de Salud Pública, Instituto Nacional de Salud, Capac Yupanqui 1400-Jesus Maria, Lima, Peru.ORCID http://orcid.org/0000-0001-6547-6999
Natalia Vargas-HerreraCentro Nacional de Salud Pública, Instituto Nacional de Salud, Capac Yupanqui 1400-Jesus Maria, Lima, Peru. nataliavh84@gmail.com.ORCID http://orcid.org/0000-0002-0948-0114
Luis Bárcena-FloresCentro Nacional de Salud Pública, Instituto Nacional de Salud, Capac Yupanqui 1400-Jesus Maria, Lima, Peru.ORCID http://orcid.org/0000-0001-8776-8888
Verónica HurtadoCentro Nacional de Salud Pública, Instituto Nacional de Salud, Capac Yupanqui 1400-Jesus Maria, Lima, Peru.ORCID http://orcid.org/0000-0003-3667-6806
Carlos Padilla-RojasCentro Nacional de Salud Pública, Instituto Nacional de Salud, Capac Yupanqui 1400-Jesus Maria, Lima, Peru.ORCID http://orcid.org/0000-0002-0562-0431
Roger V Araujo-CastilloCentro Nacional de Salud Pública, Instituto Nacional de Salud, Capac Yupanqui 1400-Jesus Maria, Lima, Peru.ORCID http://orcid.org/0000-0002-3740-1962

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

During the third year of the pandemic in Peru, the persistent transmission of SARS-CoV-2 led to the appearance of more transmissible and immune-evasive Omicron sublineages; in that context, the National Genomic Surveillance of SARS-CoV-2 performed by the Peruvian National Institute of Health detected spike mutations in the circulating Omicron BA.5.1.25 sublineage which was later designated as DJ.1 and increased during the fourth COVID-19 wave, this eventually branched into new sublineages. The introduction, emergence, and timing of the most recent common ancestor (tMRCA) of BA.5.1.25 and its descendants (DJ.1, DJ.1.1, DJ.1.2, and DJ.1.3) were investigated in this paper as well as the time lags between their emergence and identification by the Peruvian National Institute of Health. Our findings show that ongoing genomic surveillance of SARS-CoV-2 is critical for understanding its phylogenetic evolution and the emergence of novel variations.

Indexed as

COVID-19GenomicsOmicronPeruSARS-CoV-2Surveillance

Identifiers

PMID38907313
PMCPMC11184951

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.