Evidence map›Paper›PMID 38907156›Full record

ArticleMethods in molecular biology (Clifton, N.J.)2024

Bioinformatics Pipeline for Processing Single-Cell Data.

Arthur Declercq, Nina Demeulemeester, Ralf Gabriels, Robbin Bouwmeester, Sven Degroeve, Lennart Martens

Abstract read
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In one paragraph

Article in Methods in molecular biology (Clifton, N.J.), 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Arthur DeclercqVIB-UGent Center for Medical Biotechnology, VIB, Ghent, Belgium.
Nina DemeulemeesterVIB-UGent Center for Medical Biotechnology, VIB, Ghent, Belgium.
Ralf GabrielsVIB-UGent Center for Medical Biotechnology, VIB, Ghent, Belgium.
Robbin BouwmeesterVIB-UGent Center for Medical Biotechnology, VIB, Ghent, Belgium.
Sven DegroeveVIB-UGent Center for Medical Biotechnology, VIB, Ghent, Belgium.
Lennart MartensVIB-UGent Center for Medical Biotechnology, VIB, Ghent, Belgium. lennart.martens@ugent.be.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Single-cell proteomics can offer valuable insights into dynamic cellular interactions, but identifying proteins at this level is challenging due to their low abundance. In this chapter, we present a state-of-the-art bioinformatics pipeline for single-cell proteomics that combines the search engine Sage (via SearchGUI), identification rescoring with MS

Indexed as

Computational BiologyProteomicsSingle-Cell AnalysisSoftwareTandem Mass SpectrometryChromatography, LiquidHumansProteomeSearch EngineProteomeBioinformaticsDeepLCMachine learningMS2PIPMS2RescoreSingle-cell proteomics

Identifiers

PMID38907156

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.