Evidence map›Paper›PMID 38906853›Full record

ArticleNature communications2024

SuperAnimal pretrained pose estimation models for behavioral analysis.

Shaokai Ye, Anastasiia Filippova, Jessy Lauer, Steffen Schneider, Maxime Vidal, Tian Qiu, Alexander Mathis, Mackenzie Weygandt Mathis

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 44 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
44citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

44 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
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  15. Autism associatedbioRxiv : the preprint server for biology · 2026
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  16. Keypoint-Based Forest Musk Deer Behavioral Recognition Method.Animals : an open access journal from MDPI · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Shaokai YeÉcole Polytechnique Fédérale de Lausanne (EPFL), Brain Mind Institute & Neuro-X Institute, Geneva, Switzerland.
Anastasiia FilippovaÉcole Polytechnique Fédérale de Lausanne (EPFL), Brain Mind Institute & Neuro-X Institute, Geneva, Switzerland.
Jessy LauerÉcole Polytechnique Fédérale de Lausanne (EPFL), Brain Mind Institute & Neuro-X Institute, Geneva, Switzerland.
Steffen SchneiderÉcole Polytechnique Fédérale de Lausanne (EPFL), Brain Mind Institute & Neuro-X Institute, Geneva, Switzerland.
Maxime VidalÉcole Polytechnique Fédérale de Lausanne (EPFL), Brain Mind Institute & Neuro-X Institute, Geneva, Switzerland.
Tian QiuÉcole Polytechnique Fédérale de Lausanne (EPFL), Brain Mind Institute & Neuro-X Institute, Geneva, Switzerland.
Alexander MathisÉcole Polytechnique Fédérale de Lausanne (EPFL), Brain Mind Institute & Neuro-X Institute, Geneva, Switzerland.ORCID 0000-0002-3777-2202
Mackenzie Weygandt MathisÉcole Polytechnique Fédérale de Lausanne (EPFL), Brain Mind Institute & Neuro-X Institute, Geneva, Switzerland. mackenzie.mathis@epfl.ch.ORCID 0000-0001-7368-4456

Funding

Computational foundations of active visual sensingUF1NS126566 · NINDS · STANFORD UNIVERSITY · PI MATHIS, MACKENZIE WEYGANDT, NIELL, CRISTOPHER M · 2022 to 2022
$4.8M
NINDS NIH HHS UF1 NS126566Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung (Swiss National Science Foundation) 310030_201057
6 · The paper itself

Abstract

Quantification of behavior is critical in diverse applications from neuroscience, veterinary medicine to animal conservation. A common key step for behavioral analysis is first extracting relevant keypoints on animals, known as pose estimation. However, reliable inference of poses currently requires domain knowledge and manual labeling effort to build supervised models. We present SuperAnimal, a method to develop unified foundation models that can be used on over 45 species, without additional manual labels. These models show excellent performance across six pose estimation benchmarks. We demonstrate how to fine-tune the models (if needed) on differently labeled data and provide tooling for unsupervised video adaptation to boost performance and decrease jitter across frames. If fine-tuned, SuperAnimal models are 10-100× more data efficient than prior transfer-learning-based approaches. We illustrate the utility of our models in behavioral classification and kinematic analysis. Collectively, we present a data-efficient solution for animal pose estimation.

Indexed as

Behavior, AnimalAlgorithmsAnimalsBiomechanical PhenomenaPostureVideo Recording

Identifiers

PMID38906853
PMCPMC11192880

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.