Evidence map›Paper›PMID 38904893›Full record

ArticleJournal of biomolecular NMR2024

Sedimentation of large, soluble proteins up to 140 kDa for

Dallas Bell, Florian Lindemann, Lisa Gerland, Hanna Aucharova, Alexander Klein, Daniel Friedrich, Matthias Hiller, Kristof Grohe, Tobias Meier, Barth van Rossum and 6 more

Abstract read
In one paragraph

Article in Journal of biomolecular NMR, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. A random fractionalMagnetic resonance letters · 2026
    Article
  3. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

16 authors.

Dallas BellFaculty II-Mathematics and Natural Sciences, Technische Universität Berlin, Straße des 17. Juni 135, 10623, Berlin, Germany.
Florian LindemannLeibniz-Forschungsinstitut für Molekulare Pharmakologie, Robert-Rössle-Str. 10, 13125, Berlin, Germany.
Lisa GerlandLeibniz-Forschungsinstitut für Molekulare Pharmakologie, Robert-Rössle-Str. 10, 13125, Berlin, Germany.
Hanna AucharovaDepartment of Chemistry and Chemical Biology, TU Dortmund University, Otto-Hahn-Str. 4a, 44227, Dortmund, Germany.
Alexander KleinDepartment of Chemistry and Chemical Biology, TU Dortmund University, Otto-Hahn-Str. 4a, 44227, Dortmund, Germany.
Daniel FriedrichDepartment of Chemistry and Biochemistry, University of Cologne, Greinstr. 4, 50939, Cologne, Germany.
Matthias HillerLeibniz-Forschungsinstitut für Molekulare Pharmakologie, Robert-Rössle-Str. 10, 13125, Berlin, Germany.
Kristof GroheBruker BioSpin GmbH & Co. KG, Rudolf-Plank-Str. 23, 76275, Ettlingen, Germany.
Tobias MeierBruker BioSpin GmbH & Co. KG, Rudolf-Plank-Str. 23, 76275, Ettlingen, Germany.
Barth van RossumLeibniz-Forschungsinstitut für Molekulare Pharmakologie, Robert-Rössle-Str. 10, 13125, Berlin, Germany.
Anne DiehlLeibniz-Forschungsinstitut für Molekulare Pharmakologie, Robert-Rössle-Str. 10, 13125, Berlin, Germany.
Jon HughesInstitute for Plant Physiology, Justus Liebig University, Senckenbergstr. 3, 35360, Gießen, Germany.
Leonard J MuellerDepartment of Chemistry, University of California - Riverside, Riverside, CA, 92521, USA.
Rasmus LinserDepartment of Chemistry and Chemical Biology, TU Dortmund University, Otto-Hahn-Str. 4a, 44227, Dortmund, Germany.
Anne-Frances MillerFaculty II-Mathematics and Natural Sciences, Technische Universität Berlin, Straße des 17. Juni 135, 10623, Berlin, Germany. afmill3r2@gmail.com.
Hartmut OschkinatLeibniz-Forschungsinstitut für Molekulare Pharmakologie, Robert-Rössle-Str. 10, 13125, Berlin, Germany. oschkinat@fmp-berlin.de.

Funding

Structural and proton dynamics of pyridoxal-5’-phosphate dependent enzymes Resubmission (Equipment Supplement)R01GM137008 · NIGMS · UNIVERSITY OF GEORGIA · PI KOVALEVSKYI, ANDRII Y, MUELLER, LEONARD J · 2020 to 2023
$2.8M
NMR crystallography: Imaging active site chemistry and protonation statesR35GM145369 · NIGMS · UNIVERSITY OF CALIFORNIA RIVERSIDE · PI Leonard J Mueller · 2022 to 2026
$2.1M
European Research Council 101082494NIGMS NIH HHS R01 GM137008NIGMS NIH HHS R35 GM145369
6 · The paper itself

Abstract

Solution NMR is typically applied to biological systems with molecular weights < 40 kDa whereas magic-angle-spinning (MAS) solid-state NMR traditionally targets very large, oligomeric proteins and complexes exceeding 500 kDa in mass, including fibrils and crystalline protein preparations. Here, we propose that the gap between these size regimes can be filled by the approach presented that enables investigation of large, soluble and fully protonated proteins in the range of 40-140 kDa. As a key step, ultracentrifugation produces a highly concentrated, gel-like state, resembling a dense phase in spontaneous liquid-liquid phase separation (LLPS). By means of three examples, a Sulfolobus acidocaldarius bifurcating electron transfer flavoprotein (SaETF), tryptophan synthases from Salmonella typhimurium (StTS) and their dimeric β-subunits from Pyrococcus furiosus (PfTrpB), we show that such samples yield well-resolved proton-detected 2D and 3D NMR spectra at 100 kHz MAS without heterogeneous broadening, similar to diluted liquids. Herein, we provide practical guidance on centrifugation conditions and tools, sample behavior, and line widths expected. We demonstrate that the observed chemical shifts correspond to those obtained from µM/low mM solutions or crystalline samples, indicating structural integrity. Nitrogen line widths as low as 20-30 Hz are observed. The presented approach is advantageous for proteins or nucleic acids that cannot be deuterated due to the expression system used, or where relevant protons cannot be re-incorporated after expression in deuterated medium, and it circumvents crystallization. Importantly, it allows the use of low-glycerol buffers in dynamic nuclear polarization (DNP) NMR of proteins as demonstrated with the cyanobacterial phytochrome Cph1.

Indexed as

Nuclear Magnetic Resonance, BiomolecularMolecular WeightProteinsPyrococcus furiosusSolubilityUltracentrifugationProteinsDense phaseMagic-angle-spinningProtein NMRSolid-state NMRUltracentrifugation

Identifiers

PMID38904893
PMCPMC7616530

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.