Evidence map›Paper›PMID 38903798›Full record

ArticleFrontiers in microbiology2024

Epitope screening and self-assembled nanovaccine molecule design of PDCoV-S protein based on immunoinformatics.

Yaping Chen, Xinqi Song, Wenshuang Chen, Xinyi Zhao, Li Yang, Dongyu Liu

Abstract read
In one paragraph

Article in Frontiers in microbiology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Yaping Chen *College of Animal Science and Technology, Heilongjiang Bayi Agricultural University, Daqing, Heilongjiang, China.
Xinqi Song *College of Animal Science and Technology, Heilongjiang Bayi Agricultural University, Daqing, Heilongjiang, China.
Wenshuang ChenCollege of Animal Science and Technology, Heilongjiang Bayi Agricultural University, Daqing, Heilongjiang, China.
Xinyi ZhaoCollege of Animal Science and Technology, Heilongjiang Bayi Agricultural University, Daqing, Heilongjiang, China.
Li YangCollege of Animal Science and Technology, Heilongjiang Bayi Agricultural University, Daqing, Heilongjiang, China.
Dongyu LiuCollege of Animal Science and Technology, Heilongjiang Bayi Agricultural University, Daqing, Heilongjiang, China.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Based on the whole virus or spike protein of pigs, δ coronavirus (PDCoV) as an immunogen may have unrelated antigenic epitope interference. Therefore, it is essential for screening and identifying advantageous protective antigen epitopes. In addition, immunoinformatic tools are described as an important aid in determining protective antigenic epitopes. In this study, the primary, secondary, and tertiary structures of vaccines were measured using ExPASy, PSIPRED 4.0, and trRosetta servers. Meanwhile, the molecular docking analysis and vector of the candidate nanovaccine were constructed. The immune response of the candidate vaccine was simulated and predicted using the C-ImmSim server. This experiment screened B cell epitopes with strong immunogenicity and high conservation, CTL epitopes, and Th epitopes with IFN-γ and IL-4 positive spike proteins. Ferritin is used as a self-assembled nanoparticle element for designing candidate nanovaccine. After analysis, it has been found to be soluble, stable, non-allergenic, and has a high affinity for its target receptor, TLR-3. The preliminary simulation analysis results show that the candidate nanovaccine has the ability to induce a humoral and cellular immune response. Therefore, it may provide a new theoretical basis for research on coronavirus self-assembled nanovaccines. It may be an effective candidate vaccine for controlling and preventing PDCoV.

Indexed as

immunoinformaticsnanovaccineporcine delta coronavirusself-assembledS protein

Identifiers

PMID38903798
PMCPMC11186991

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.