Evidence map›Paper›PMID 38903742›Full record

ArticleArXiv2024

MetaCompass: Reference-guided Assembly of Metagenomes.

Tu Luan, Victoria Cepeda, Bo Liu, Zac Bowen, Ujjwal Ayyangar, Mathieu Almeida, Christopher M Hill, Sergey Koren, Todd J Treangen, Adam Porter and 1 more

Abstract readPreprint
PubMed Full text at PMC
In one paragraph

Article in ArXiv, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

11 authors.

Tu LuanDepartment of Computer Science, University of Maryland, College Park, Maryland, USA.
Victoria CepedaDepartment of Computer Science, University of Maryland, College Park, Maryland, USA.
Bo LiuDepartment of Computer Science, University of Maryland, College Park, Maryland, USA.
Zac BowenFraunhofer USA Center Mid-Atlantic, Riverdale, Maryland, USA.
Ujjwal AyyangarFraunhofer USA Center Mid-Atlantic, Riverdale, Maryland, USA.
Mathieu AlmeidaCenter for Bioinformatics and Computational Biology, University of Maryland, College Park, Maryland, USA.
Christopher M HillDepartment of Computer Science, University of Maryland, College Park, Maryland, USA.
Sergey KorenGenome Informatics Section, Computational and Statistical Genomics Branch, National Human Genome Research Institute, Bethesda, Maryland, USA.
Todd J TreangenCenter for Bioinformatics and Computational Biology, University of Maryland, College Park, Maryland, USA.
Adam PorterDepartment of Computer Science, University of Maryland, College Park, Maryland, USA.
Mihai PopDepartment of Computer Science, University of Maryland, College Park, Maryland, USA.

Funding

Algorithms and Software for the Assembly of Metagenomic DataR01AI100947 · NIAID · UNIV OF MARYLAND, COLLEGE PARK · PI POP, MIHAI · 2013 to 2025
$7.4M
Assembly and analysis software for exploring the human microbiomeR01HG004885 · NHGRI · UNIV OF MARYLAND, COLLEGE PARK · PI POP, MIHAI · 2008 to 2010
$888k
NHGRI NIH HHS R01 HG004885NIAID NIH HHS R01 AI100947
6 · The paper itself

Abstract

Metagenomic studies have primarily relied on

Indexed as

comparative assemblylow coverage assemblymetagenome assemblymicrobiome

Identifiers

PMID38903742
PMCPMC11188144

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.