Evidence map›Paper›PMID 38903016›Full record

ArticleThe journal of physical chemistry. B2024

A Membrane-Assisted Mechanism for the Release of Ceramide from the CERT START Domain.

Mahmoud Moqadam, Parveen Gartan, Reza Talandashti, Antonella Chiapparino, Kevin Titeca, Anne-Claude Gavin, Nathalie Reuter

Abstract read
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Article in The journal of physical chemistry. B, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

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4 · The record

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PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Mahmoud MoqadamDepartment of Chemistry, University of Bergen, Bergen 5020, Norway.ORCID 0000-0002-3456-5064
Parveen GartanDepartment of Chemistry, University of Bergen, Bergen 5020, Norway.
Reza TalandashtiDepartment of Chemistry, University of Bergen, Bergen 5020, Norway.
Antonella ChiapparinoEuropean Molecular Biology Laboratory, EMBL, Meyerhofstrasse 1, Heidelberg D-69117, Germany.
Kevin TitecaEuropean Molecular Biology Laboratory, EMBL, Meyerhofstrasse 1, Heidelberg D-69117, Germany.ORCID 0000-0002-7677-8252
Anne-Claude GavinDepartment of Cell Physiology and Metabolism, University of Geneva, CMU Rue Michel-Servet 1, Genève 4 1211, Switzerland.
Nathalie ReuterDepartment of Chemistry, University of Bergen, Bergen 5020, Norway.ORCID 0000-0002-3649-7675

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Ceramide transfer protein CERT is the mediator of nonvesicular transfer of ceramide from the ER to Golgi. In CERT, START is the domain responsible for the binding and transport of ceramide. A wealth of structural data has revealed a helix-grip fold surrounding a large hydrophobic cavity holding the ceramide. Yet, little is known about the mechanisms by which START releases the ceramide through the polar region and into the packed environment of cellular membranes. As such events do not lend themselves easily to experimental investigations, we used multiple unbiased microsecond-long molecular simulations. We propose a membrane-assisted mechanism in which the membrane acts as an allosteric effector initiating the release of ceramide and where the passage of the ceramide acyl chains is facilitated by the intercalation of a single phosphatidylcholine lipid in the cavity, practically greasing the ceramide way out. We verify using free energy calculation and experimental lipidomics data that CERT forms stable complexes with phosphatidylcholine lipids, in addition to ceramide, thus providing validation for the proposed mechanism.

Indexed as

CeramidesMolecular Dynamics SimulationCell MembraneHumansPhosphatidylcholinesProtein DomainsProtein Serine-Threonine KinasesThermodynamicsCeramidesCERT1 protein, humanPhosphatidylcholinesProtein Serine-Threonine Kinases

Identifiers

PMID38903016
PMCPMC11228987

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.