Evidence map›Paper›PMID 38902615›Full record

ArticleBMC microbiology2024

Exploring endophytic bacteria communities of Vanilla planifolia.

Keshika Mahadeo, Ahmed Taïbi, Jean-Christophe Meile, Bertrand Côme, Anne Gauvin-Bialecki, Hasna Boubakri, Aude Herrera-Belaroussi, Hippolyte Kodja

Abstract read
In one paragraph

Article in BMC microbiology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Keshika MahadeoLaboratoire de Chimie et Biotechnologie des Produits Naturels, Faculté des Sciences et Technologies, Université de la Réunion, 15 Avenue René Cassin, CS 92 003, 97 744 St Denis Cedex 9, La Réunion, France.
Ahmed TaïbiQualiSud, Université de La Réunion, Univ Montpellier, Avignon Université, CIRAD, Institut Agro, Montpellier, France.
Jean-Christophe MeileQualiSud, Université de La Réunion, Univ Montpellier, Avignon Université, CIRAD, Institut Agro, Montpellier, France.
Bertrand CômeLa Vanilleraie, 2 ter Domaine du Grand Hazier, allée Chassagne, Sainte Suzanne, Réunion, 97441, France.
Anne Gauvin-BialeckiLaboratoire de Chimie et Biotechnologie des Produits Naturels, Faculté des Sciences et Technologies, Université de la Réunion, 15 Avenue René Cassin, CS 92 003, 97 744 St Denis Cedex 9, La Réunion, France.
Hasna BoubakriLaboratoire d'Ecologie Microbienne, Université Claude Bernard Lyon 1, UMR CNRS 5557, UMR INRAE 1418, VetAgro Sup, Villeurbanne, 69622, France.
Aude Herrera-BelaroussiLaboratoire d'Ecologie Microbienne, Université Claude Bernard Lyon 1, UMR CNRS 5557, UMR INRAE 1418, VetAgro Sup, Villeurbanne, 69622, France.
Hippolyte KodjaQualiSud, Université de La Réunion, Univ Montpellier, Avignon Université, CIRAD, Institut Agro, Montpellier, France. hippolyte.kodja@univ-reunion.fr.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundRhizosphere bacterial community and endophytes are now known to influence plant health and response to environmental stress. Very few studies have reported the diversity of endophytic bacterial communities of Vanilla planifolia and their potential roles in promoting plant growth or contributing to aromatic quality.

resultsIn this study, the composition and diversity of the Vanilla rhizosphere bacterial community were explored by analyzing rhizosphere soil and root tissue samples as well as green pods of three accessions of Vanilla planifolia grown on different types of substrates (compost and leaf litter). In addition, the endophytic bacterial diversity of roots and green pods as well as the evolution of endophytic bacteria after the curing process of vanilla green pods were analyzed based on a metabarcoding approach. The results showed that bacterial species richness and diversity were higher in the compost. The analysis of the soil bacterial composition displayed that Halomonas, Pseudoalteromonas, Enterobacter and Bradyrhizobium were the most abundant genera. Moreover, the results indicated that the soil bacterial community structure was linked to the host plant genotype. Regarding the roots endophytic bacteria composition, the genera Halomonas, Pseudoalteromonas, Bacillus and Carboxydocella genera were present in all samples, independently from the substrate nature. Several genera including Bacillus, Bradyrhizobium, Burkholderia and Halomonas were transmitted internally from the roots to the green pods. The curing process reduced the bacterial richness and bacterial diversity associated with the green pods. Halomonas, Pseudoalteromonas, Bacillus, and Carboxydocella are the dominant genera in the pods after the curing process.

conclusionsThis study provides an overview of changes of the bacterial communities dynamics especially endophytic in the roots and the green pods. It highlighted bacterial genera (Halomonas, Pseudoalteromonas, Bacillus, and Carboxydocella) potentially implicated in the formation of aroma compounds of vanilla beans.

Indexed as

BacteriaBiodiversityEndophytesPlant RootsRhizosphereSoil MicrobiologyVanillaDNA, BacterialMicrobiotaPhylogenyRNA, Ribosomal, 16SDNA, BacterialRNA, Ribosomal, 16SCuring processEndophytic bacteriaMicrobial transmissionSubstrateVanilla accession

Identifiers

PMID38902615
PMCPMC11188167

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.