Evidence map›Paper›PMID 38902266›Full record

ArticleNature communications2024

Non-consecutive enzyme interactions within TCA cycle supramolecular assembly regulate carbon-nitrogen metabolism.

Weronika Jasinska, Mirco Dindo, Sandra M C Cordoba, Adrian W R Serohijos, Paola Laurino, Yariv Brotman, Shimon Bershtein

Erratum issuedAbstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
  2. Article
  3. Emergent Chemical Reactivity and Complexity of RNA Condensates.Angewandte Chemie (International ed. in English) · 2025
    Article
  4. Review
  5. Review
  6. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

7 authors.

Weronika Jasinska *Department of Life Sciences, Ben-Gurion University of the Negev, Beer-Sheva, Israel.
Mirco Dindo *Protein Engineering and Evolution Unit, Okinawa Institute of Science and Technology Graduate University, Okinawa, Japan.
Sandra M C CordobaMax-Planck-Institut fur Molekulare Pflanzenphysiologie, Potsdam-Golm, Germany.ORCID 0000-0002-5049-9271
Adrian W R SerohijosDepartement de Biochimie, Universite de Montreal, Quebec, Canada.ORCID 0000-0001-8369-982X
Paola LaurinoProtein Engineering and Evolution Unit, Okinawa Institute of Science and Technology Graduate University, Okinawa, Japan. paola.laurino@oist.jp.ORCID 0000-0002-3725-2645
Yariv BrotmanDepartment of Life Sciences, Ben-Gurion University of the Negev, Beer-Sheva, Israel. brotmany@bgu.ac.il.
Shimon BershteinDepartment of Life Sciences, Ben-Gurion University of the Negev, Beer-Sheva, Israel. shimonb@bgu.ac.il.ORCID 0000-0003-4322-1025

Funding

Israel Science Foundation (ISF) 593/21
6 · The paper itself

Abstract

Enzymes of the central metabolism tend to assemble into transient supramolecular complexes. However, the functional significance of the interactions, particularly between enzymes catalyzing non-consecutive reactions, remains unclear. Here, by co-localizing two non-consecutive enzymes of the TCA cycle from Bacillus subtilis, malate dehydrogenase (MDH) and isocitrate dehydrogenase (ICD), in phase separated droplets we show that MDH-ICD interaction leads to enzyme agglomeration with a concomitant enhancement of ICD catalytic rate and an apparent sequestration of its reaction product, 2-oxoglutarate. Theory demonstrates that MDH-mediated clustering of ICD molecules explains the observed phenomena. In vivo analyses reveal that MDH overexpression leads to accumulation of 2-oxoglutarate and reduction of fluxes flowing through both the catabolic and anabolic branches of the carbon-nitrogen intersection occupied by 2-oxoglutarate, resulting in impeded ammonium assimilation and reduced biomass production. Our findings suggest that the MDH-ICD interaction is an important coordinator of carbon-nitrogen metabolism.

Indexed as

Bacillus subtilisCarbonCitric Acid CycleIsocitrate DehydrogenaseKetoglutaric AcidsMalate DehydrogenaseNitrogenAmmonium CompoundsBacterial ProteinsAmmonium CompoundsBacterial ProteinsCarbonIsocitrate DehydrogenaseKetoglutaric AcidsMalate DehydrogenaseNitrogen

Identifiers

PMID38902266
PMCPMC11189929

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.