Evidence map›Paper›PMID 38902256›Full record

ArticleBlood cancer journal2024

Multiomic analysis identifies a high-risk signature that predicts early clinical failure in DLBCL.

Kerstin Wenzl, Matthew E Stokes, Joseph P Novak, Allison M Bock, Sana Khan, Melissa A Hopper, Jordan E Krull, Abigail R Dropik, Janek S Walker, Vivekananda Sarangi and 20 more

Abstract read
In one paragraph

Article in Blood cancer journal, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

30 authors.

Kerstin Wenzl *Division of Hematology, Mayo Clinic, Rochester, MN, USA.
Matthew E Stokes *Informatics and Predictive Sciences, , Bristol Myers Squibb, Summit, NJ, USA.
Joseph P NovakDivision of Hematology, Mayo Clinic, Rochester, MN, USA.
Allison M BockDivision of Hematology, Mayo Clinic, Rochester, MN, USA.
Sana KhanDivision of Hematology, Mayo Clinic, Rochester, MN, USA.
Melissa A HopperDivision of Hematology, Mayo Clinic, Rochester, MN, USA.ORCID 0000-0003-0675-8253
Jordan E KrullDivision of Hematology, Mayo Clinic, Rochester, MN, USA.ORCID 0000-0001-6507-8085
Abigail R DropikDivision of Hematology, Mayo Clinic, Rochester, MN, USA.ORCID 0000-0002-7543-5768
Janek S WalkerDivision of Hematology, Mayo Clinic, Rochester, MN, USA.
Vivekananda SarangiDepartment of Quantitative Health Sciences Research, Mayo Clinic, Rochester, MN, USA.
Raphael MwangiDepartment of Quantitative Health Sciences Research, Mayo Clinic, Rochester, MN, USA.
Maria OrtizInformatics and Predictive Sciences, Celgene Institute for Translational Research Europe (CITRE), Seville, Spain.
Nicholas StongInformatics and Predictive Sciences, , Bristol Myers Squibb, Summit, NJ, USA.
C Chris HuangTranslational Medicine Hematology, Bristol Myers Squibb, Summit, NJ, USA.ORCID 0000-0002-1116-2756
Matthew J MaurerDivision of Hematology, Mayo Clinic, Rochester, MN, USA.ORCID 0000-0002-1867-0526
Lisa RimszaDivision of Hematopathology, Mayo Clinic, Scottsdale, AZ, USA.
Brian K LinkDivision of Hematology, University of Iowa, Iowa, USA.
Susan L SlagerDepartment of Quantitative Health Sciences Research, Mayo Clinic, Rochester, MN, USA.ORCID 0000-0002-5173-4712
Yan AsmannDepartment of Quantitative Health Sciences Research, Mayo Clinic, Jacksonville, FL, USA.
Patrizia MondelloDivision of Hematology, Mayo Clinic, Rochester, MN, USA.ORCID 0000-0002-0355-3757
Ryan MorinGenome Sciences Center, British Columbia Cancer Agency, Vancouver, BC, Canada.
Stephen M AnsellDivision of Hematology, Mayo Clinic, Rochester, MN, USA.ORCID 0000-0003-1244-6758
Thomas M HabermannDivision of Hematology, Mayo Clinic, Rochester, MN, USA.ORCID 0000-0003-3532-9132
Thomas E WitzigDivision of Hematology, Mayo Clinic, Rochester, MN, USA.ORCID 0000-0002-4215-6500
Andrew L FeldmanDepartment of Laboratory Medicine and Pathology, Mayo Clinic, Rochester, MN, USA.ORCID 0000-0001-5009-4808
Rebecca L KingDepartment of Laboratory Medicine and Pathology, Mayo Clinic, Rochester, MN, USA.ORCID 0000-0002-7132-0226
Grzegorz NowakowskiDivision of Hematology, Mayo Clinic, Rochester, MN, USA.ORCID 0000-0002-6955-9393
James R CerhanDepartment of Quantitative Health Sciences Research, Mayo Clinic, Rochester, MN, USA.ORCID 0000-0002-7482-178X
Anita K GandhiTranslational Medicine Hematology, Bristol Myers Squibb, Summit, NJ, USA.
Anne J NovakDivision of Hematology, Mayo Clinic, Rochester, MN, USA. Novak.Anne@mayo.edu.ORCID 0000-0002-7904-1651

Funding

Viral VectorP30CA086862 · NCI · UNIVERSITY OF IOWA · PI Christopher K Laubenthal · 2000 to 2026
$70.0M
The Role of Monocytes in non-Hodgkin LymphomaP50CA097274 · NCI · UNIVERSITY OF IOWA · PI LENTZ, STEVEN R · 2002 to 2021
$45.7M
The Lymphoma Epidemiology of Outcomes (LEO) Cohort Study (Supplement)U01CA195568 · NCI · MAYO CLINIC ROCHESTER · PI CERHAN, JAMES R, FLOWERS, CHRISTOPHER R · 2015 to 2025
$22.1M
PHD TRAINING PROGRAM IN BASIC IMMUNOLOGYT32AI007425 · NIAID · MAYO CLINIC ROCHESTER · PI SHAPIRO, VIRGINIA SMITH · 1995 to 2020
$3.6M
Genetic Predictors of Early Clinical Failure in Diffuse Large B Cell LymphomaR01CA212162 · NCI · MAYO CLINIC ROCHESTER · PI CERHAN, JAMES R, NOVAK, ANNE JOSEPHINE · 2017 to 2021
$3.3M
Training Program in ImmunologyT32AI170478 · NIAID · MAYO CLINIC ROCHESTER · PI Virginia Smith Shapiro · 2022 to 2026
$1.4M
NCI NIH HHS P30 CA086862NCI NIH HHS P50 CA097274NCI NIH HHS R01 CA212162NCI NIH HHS U01 CA195568NIAID NIH HHS T32 AI007425NIAID NIH HHS T32 AI170478U.S. Department of Health & Human Services | National Institutes of Health (NIH) CA195568U.S. Department of Health & Human Services | NIH | National Cancer Institute (NCI) R01 CA212162-01A1U.S. Department of Health & Human Services | NIH | National Cancer Institute (NCI) SPORE-P50 CA97274
6 · The paper itself

Abstract

Recent genetic and molecular classification of DLBCL has advanced our knowledge of disease biology, yet were not designed to predict early events and guide anticipatory selection of novel therapies. To address this unmet need, we used an integrative multiomic approach to identify a signature at diagnosis that will identify DLBCL at high risk of early clinical failure. Tumor biopsies from 444 newly diagnosed DLBCL were analyzed by WES and RNAseq. A combination of weighted gene correlation network analysis and differential gene expression analysis was used to identify a signature associated with high risk of early clinical failure independent of IPI and COO. Further analysis revealed the signature was associated with metabolic reprogramming and identified cases with a depleted immune microenvironment. Finally, WES data was integrated into the signature and we found that inclusion of ARID1A mutations resulted in identification of 45% of cases with an early clinical failure which was validated in external DLBCL cohorts. This novel and integrative approach is the first to identify a signature at diagnosis, in a real-world cohort of DLBCL, that identifies patients at high risk for early clinical failure and may have significant implications for design of therapeutic options.

Indexed as

Lymphoma, Large B-Cell, DiffuseAdultAgedBiomarkers, TumorDNA-Binding ProteinsExome SequencingFemaleGene Expression ProfilingGene Expression Regulation, NeoplasticHumansMaleMiddle AgedMutationPrognosisTranscription FactorsTranscriptomeARID1A protein, humanBiomarkers, TumorDNA-Binding ProteinsTranscription Factors

Identifiers

PMID38902256
PMCPMC11189905

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.