Evidence map›Paper›PMID 38898440›Full record

ArticleBMC medical genomics2024

Association of disease severity and genetic variation during primary Respiratory Syncytial Virus infections.

William Bender, Yun Zhang, Anthony Corbett, Chinyi Chu, Alexander Grier, Lu Wang, Xing Qiu, Matthew N McCall, David J Topham, Edward E Walsh and 4 more

Abstract read
In one paragraph

Article in BMC medical genomics, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Review
  2. Review
  3. Article
  4. Observational
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

William BenderDivision of Infectious Disease, Department of Medicine, School of Medicine and Dentistry, University of Rochester, University of Rochester Medical Center, Rochester, NY, USA.
Yun ZhangJ. Craig Venter Institute, San Diego, CA, USA.
Anthony CorbettDepartment of Biostatistics and Computational Biology, University of Rochester Medical Center, Rochester, NY, USA.
Chinyi ChuDivision of Neonatology, Department of Pediatrics, University of Rochester Medical Center, Rochester, NY, USA.
Alexander GrierDepartment of Microbiology and Immunology, University of Rochester Medical Center, Rochester, NY, USA.
Lu WangDepartment of Biostatistics and Computational Biology, University of Rochester Medical Center, Rochester, NY, USA.
Xing QiuDepartment of Biostatistics and Computational Biology, University of Rochester Medical Center, Rochester, NY, USA.
Matthew N McCallDepartment of Biostatistics and Computational Biology, University of Rochester Medical Center, Rochester, NY, USA.
David J TophamDepartment of Microbiology and Immunology, University of Rochester Medical Center, Rochester, NY, USA.
Edward E WalshDivision of Infectious Disease, Department of Medicine, School of Medicine and Dentistry, University of Rochester, University of Rochester Medical Center, Rochester, NY, USA.
Thomas J MarianiDivision of Neonatology, Department of Pediatrics, University of Rochester Medical Center, Rochester, NY, USA.
Richard ScheuermannJ. Craig Venter Institute, San Diego, CA, USA.
Mary T CasertaDivision of Infectious Diseases, Department of Pediatrics, University of Rochester Medical Center, Rochester, NY, USA.
Christopher S AndersonDivision of Infectious Disease, Department of Medicine, School of Medicine and Dentistry, University of Rochester, University of Rochester Medical Center, Rochester, NY, USA. christopher_anderson@urmc.rochester.edu.

Funding

VISUAL INDICES OF NEUROTOXICITYP30ES001247 · NIEHS · UNIVERSITY OF ROCHESTER · PI Martha Susiarjo · 1985 to 2026
$42.8M
MULTIDISCIPLINARY TRAINING IN PULMONARY RESEARCHT32HL066988 · NHLBI · UNIVERSITY OF ROCHESTER · PI GEORAS, STEVE N, O'REILLY, MICHAEL A · 2001 to 2021
$8.1M
Development and testing of RSV vaccines using a computational framework of virus-host interactionK01AI168445 · NIAID · UNIVERSITY OF ROCHESTER · PI Christopher S Anderson · 2022 to 2026
$508k
NHLBI NIH HHS T32 HL066988NIAID NIH HHS K01 AI168445NIEHS NIH HHS P30 ES001247
6 · The paper itself

Abstract

backgroundRespiratory Syncytial Virus (RSV) disease in young children ranges from mild cold symptoms to severe symptoms that require hospitalization and sometimes result in death. Studies have shown a statistical association between RSV subtype or phylogenic lineage and RSV disease severity, although these results have been inconsistent. Associations between variation within RSV gene coding regions or residues and RSV disease severity has been largely unexplored.

methodsNasal swabs from children (< 8 months-old) infected with RSV in Rochester, NY between 1977-1998 clinically presenting with either mild or severe disease during their first cold-season were used. Whole-genome RSV sequences were obtained using overlapping PCR and next-generation sequencing. Both whole-genome phylogenetic and non-phylogenetic statistical approaches were performed to associate RSV genotype with disease severity.

resultsThe RSVB subtype was statistically associated with disease severity. A significant association between phylogenetic clustering of mild/severe traits and disease severity was also found. GA1 clade sequences were associated with severe disease while GB1 was significantly associated with mild disease. Both G and M2-2 gene variation was significantly associated with disease severity. We identified 16 residues in the G gene and 3 in the M2-2 RSV gene associated with disease severity.

conclusionThese results suggest that phylogenetic lineage and the genetic variability in G or M2-2 genes of RSV may contribute to disease severity in young children undergoing their first infection.

Indexed as

Genetic VariationPhylogenyRespiratory Syncytial Virus, HumanRespiratory Syncytial Virus InfectionsSeverity of Illness IndexFemaleGenome, ViralGenotypeHumansInfantMaleGenetic variationRespiratory infectionRSVSevere diseaseWhole-genome

Identifiers

PMID38898440
PMCPMC11188216

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.