Evidence map›Paper›PMID 38898281›Full record

ArticleNature2024

Computational design of soluble and functional membrane protein analogues.

Casper A Goverde, Martin Pacesa, Nicolas Goldbach, Lars J Dornfeld, Petra E M Balbi, Sandrine Georgeon, Stéphane Rosset, Srajan Kapoor, Jagrity Choudhury, Justas Dauparas and 6 more

Abstract read
In one paragraph

Article in Nature, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 72 papers.

0numbers the graph read from it
0cells of the map it votes in
72citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

72 citing papers in PubMed.

  1. Review
  2. Unraveling the Glycosylation Machinery ofInternational journal of molecular sciences · 2026
    Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Review
  8. Review
  9. Review
  10. Article
  11. Review
  12. Review
  13. Limitations of the refolding pipeline for de novo protein design.Protein science : a publication of the Protein Society · 2026
    Article
  14. Article
  15. Stabilizing Plasmodium falciparum proteins for small molecule drug discovery.Protein science : a publication of the Protein Society · 2026
    Article
  16. Article
  17. Reverse-engineering amyloid strains with generative protein design.bioRxiv : the preprint server for biology · 2026
    Article
  18. Activation dynamics of a water-soluble human mu-opioid receptor.The Journal of biological chemistry · 2026
    Article
  19. ProteinMCP: An agentic AI framework for autonomous protein engineering.Protein science : a publication of the Protein Society · 2026
    Article
  20. Review

12 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

16 authors.

Casper A Goverde *Laboratory of Protein Design and Immunoengineering, École Polytechnique Fédérale de Lausanne and Swiss Institute of Bioinformatics, Lausanne, Switzerland.ORCID 0009-0004-7409-4705
Martin Pacesa *Laboratory of Protein Design and Immunoengineering, École Polytechnique Fédérale de Lausanne and Swiss Institute of Bioinformatics, Lausanne, Switzerland.ORCID 0000-0003-1560-5769
Nicolas Goldbach *Laboratory of Protein Design and Immunoengineering, École Polytechnique Fédérale de Lausanne and Swiss Institute of Bioinformatics, Lausanne, Switzerland.ORCID 0000-0001-5401-3892
Lars J DornfeldLaboratory of Protein Design and Immunoengineering, École Polytechnique Fédérale de Lausanne and Swiss Institute of Bioinformatics, Lausanne, Switzerland.ORCID 0009-0009-0885-8443
Petra E M BalbiLaboratory of Protein Design and Immunoengineering, École Polytechnique Fédérale de Lausanne and Swiss Institute of Bioinformatics, Lausanne, Switzerland.
Sandrine GeorgeonLaboratory of Protein Design and Immunoengineering, École Polytechnique Fédérale de Lausanne and Swiss Institute of Bioinformatics, Lausanne, Switzerland.
Stéphane RossetLaboratory of Protein Design and Immunoengineering, École Polytechnique Fédérale de Lausanne and Swiss Institute of Bioinformatics, Lausanne, Switzerland.
Srajan KapoorDepartment of Structural Biology, University at Buffalo, Buffalo, NY, USA.
Jagrity ChoudhuryDepartment of Structural Biology, University at Buffalo, Buffalo, NY, USA.
Justas DauparasDepartment of Biochemistry, University of Washington, Seattle, WA, USA.
Christian SchellhaasLaboratory of Protein Design and Immunoengineering, École Polytechnique Fédérale de Lausanne and Swiss Institute of Bioinformatics, Lausanne, Switzerland.ORCID 0000-0001-7367-1620
Simon KozlovDepartment of Biology, Massachusetts Institute of Technology, Cambridge, MA, USA.
David BakerDepartment of Biochemistry, University of Washington, Seattle, WA, USA.ORCID 0000-0001-7896-6217
Sergey OvchinnikovDepartment of Biology, Massachusetts Institute of Technology, Cambridge, MA, USA.ORCID 0000-0003-2774-2744
Alex J VecchioDepartment of Structural Biology, University at Buffalo, Buffalo, NY, USA.ORCID 0000-0002-4222-7874
Bruno E CorreiaLaboratory of Protein Design and Immunoengineering, École Polytechnique Fédérale de Lausanne and Swiss Institute of Bioinformatics, Lausanne, Switzerland. bruno.correia@epfl.ch.ORCID 0000-0002-7377-8636

Funding

Structure and Assembly of Membrane Proteins at Tight JunctionsR35GM138368 · NIGMS · UNIVERSITY OF NEBRASKA LINCOLN · PI Alex J. Vecchio · 2020 to 2026
$3.1M
Exploring the unknown protein universe using evolutionary informationDP5OD026389 · OD · HARVARD UNIVERSITY · PI OVCHINNIKOV, SERGEY L. · 2018 to 2022
$2.0M
NIGMS NIH HHS R35 GM138368NIH HHS DP5 OD026389
6 · The paper itself

Abstract

De novo design of complex protein folds using solely computational means remains a substantial challenge

Indexed as

Computer-Aided DesignDeep LearningMembrane ProteinsProtein FoldingSolubilityAmino Acid MotifsHumansModels, MolecularProof of Concept StudyProtein StabilityProteomeReceptors, G-Protein-CoupledMembrane ProteinsProteomeReceptors, G-Protein-Coupled

Identifiers

PMID38898281
PMCPMC11236705

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.