Evidence map›Paper›PMID 38898025›Full record

ArticleNature communications2024

Small molecule in situ resin capture provides a compound first approach to natural product discovery.

Alexander Bogdanov, Mariam N Salib, Alexander B Chase, Heinz Hammerlindl, Mitchell N Muskat, Stephanie Luedtke, Elany Barbosa da Silva, Anthony J O'Donoghue, Lani F Wu, Steven J Altschuler and 2 more

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed.

  1. Passive sampling for grazer cues incorporates top-down effects in harmful algal bloom monitoring and toxin prediction.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Why Do FilamentousAnnual review of microbiology · 2025
    Review
  9. Assessing the effect of temperature onMicrobiology (Reading, England) · 2025
    Article
  10. Article
  11. Review
  12. Review
  13. ACS central science · 2023
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

12 authors.

Alexander BogdanovScripps Institution of Oceanography, University of California, San Diego, La Jolla, CA, 92093, USA.
Mariam N SalibDepartment of Chemistry and Biochemistry, University of California, San Diego, La Jolla, CA, 92093, USA.
Alexander B ChaseScripps Institution of Oceanography, University of California, San Diego, La Jolla, CA, 92093, USA.ORCID http://orcid.org/0000-0003-1984-6279
Heinz HammerlindlDepartment of Pharmaceutical Chemistry, University of California, San Francisco, San Francisco, CA, 94158, USA.ORCID http://orcid.org/0000-0001-5119-9791
Mitchell N MuskatScripps Institution of Oceanography, University of California, San Diego, La Jolla, CA, 92093, USA.ORCID http://orcid.org/0000-0001-7095-8095
Stephanie LuedtkeSkaggs School of Pharmacy and Pharmaceutical Sciences, University of California, San Diego, La Jolla, CA, 92093, USA.ORCID http://orcid.org/0000-0001-5176-667X
Elany Barbosa da SilvaSkaggs School of Pharmacy and Pharmaceutical Sciences, University of California, San Diego, La Jolla, CA, 92093, USA.
Anthony J O'DonoghueSkaggs School of Pharmacy and Pharmaceutical Sciences, University of California, San Diego, La Jolla, CA, 92093, USA.
Lani F WuDepartment of Pharmaceutical Chemistry, University of California, San Francisco, San Francisco, CA, 94158, USA.ORCID http://orcid.org/0000-0002-0052-7537
Steven J AltschulerDepartment of Pharmaceutical Chemistry, University of California, San Francisco, San Francisco, CA, 94158, USA.ORCID http://orcid.org/0000-0001-9142-0796
Tadeusz F MolinskiDepartment of Chemistry and Biochemistry, University of California, San Diego, La Jolla, CA, 92093, USA. tmolinski@ucsd.edu.ORCID http://orcid.org/0000-0003-1935-2535
Paul R JensenScripps Institution of Oceanography, University of California, San Diego, La Jolla, CA, 92093, USA. pjensen@ucsd.edu.ORCID http://orcid.org/0000-0003-2349-1888

Funding

Natural Product Genome MiningR01GM085770 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI JENSEN, PAUL R, MOORE, BRADLEY S · 2009 to 2024
$5.8M
Maximizing the predictive power of high-throughput, microscopy-based phenotypic screensR01CA184984 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI WU, LANI F · 2014 to 2025
$4.7M
Proteasome inhibitors against mucosal protozoan pathogensR01AI158612 · NIAID · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI ECKMANN, LARS, O'DONOGHUE, ANTHONY JOHN · 2021 to 2025
$3.2M
The catalytic core of the proteasome as a drug target to treat Human African TrypanosomiasisR21AI171824 · NIAID · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI CAFFREY, CONOR, O'DONOGHUE, ANTHONY JOHN · 2022 to 2023
$435k
Changing Paradigms in Natural Product Discovery: A Molecule to Microbe ApproachR21AT010493 · NCCIH · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI JENSEN, PAUL R · 2019 to 2020
$433k
DH | NIHR | Efficacy and Mechanism Evaluation Programme (NIHR Efficacy and Mechanism Evaluation Programme) R21AI171824Division of Intramural Research, National Institute of Allergy and Infectious Diseases (Division of Intramural Research of the NIAID) R01AI158612NCCIH NIH HHS R21 AT010493NCI NIH HHS R01 CA184984NIAID NIH HHS R01 AI158612NIAID NIH HHS R21 AI171824NIGMS NIH HHS R01 GM085770U.S. Department of Health & Human Services | NIH | National Cancer Institute (NCI) R01CA184984U.S. Department of Health & Human Services | NIH | National Center for Complementary and Integrative Health (NCCIH) R21AT010493
6 · The paper itself

Abstract

Culture-based microbial natural product discovery strategies fail to realize the extraordinary biosynthetic potential detected across earth's microbiomes. Here we introduce Small Molecule In situ Resin Capture (SMIRC), a culture-independent method to obtain natural products directly from the environments in which they are produced. We use SMIRC to capture numerous compounds including two new carbon skeletons that were characterized using NMR and contain structural features that are, to the best of our knowledge, unprecedented among natural products. Applications across diverse marine habitats reveal biome-specific metabolomic signatures and levels of chemical diversity in concordance with sequence-based predictions. Expanded deployments, in situ cultivation, and metagenomics facilitate compound discovery, enhance yields, and link compounds to candidate producing organisms, although microbial community complexity creates challenges for the later. This compound-first approach to natural product discovery provides access to poorly explored chemical space and has implications for drug discovery and the detection of chemically mediated biotic interactions.

Indexed as

Biological ProductsDrug DiscoveryMagnetic Resonance SpectroscopyMetabolomicsMetagenomicsMicrobiotaSmall Molecule LibrariesBiological ProductsSmall Molecule Libraries

Identifiers

PMID38898025
PMCPMC11187115

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.