Evidence map›Paper›PMID 38896469›Full record

ArticleeLife2024

Diffusive lensing as a mechanism of intracellular transport and compartmentalization.

Achuthan Raja Venkatesh, Kathy H Le, David M Weld, Onn Brandman

Abstract read
In one paragraph

Article in eLife, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
  3. Asymmetric distribution of actin-related proteins in the earlybioRxiv : the preprint server for biology · 2026
    Article
  4. Article
  5. Review
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Achuthan Raja VenkateshDepartment of Biochemistry, Stanford University, Stanford, United States.ORCID https://orcid.org/0009-0003-1868-4068
Kathy H LeDepartment of Biochemistry, Stanford University, Stanford, United States.ORCID https://orcid.org/0009-0001-5575-7153
David M WeldDepartment of Physics, University of California, Santa Barbara, Santa Barbara, United States.ORCID https://orcid.org/0000-0002-4574-9491
Onn BrandmanDepartment of Biochemistry, Stanford University, Stanford, United States.ORCID https://orcid.org/0000-0002-2084-154X

Funding

Stress Response Pathways Regulating Protein HomeostasisR35GM153301 · NIGMS · STANFORD UNIVERSITY · PI Onn Brandman · 2024 to 2026
$1.4M
Cellular regulation of viscosityR01GM148526 · NIGMS · STANFORD UNIVERSITY · PI BRANDMAN, ONN · 2023 to 2024
$616k
National Science Foundation DGE-1656518NIGMS NIH HHS R01 GM148526NIGMS NIH HHS R35 GM153301NIH HHS R35GM153301
6 · The paper itself

Abstract

While inhomogeneous diffusivity has been identified as a ubiquitous feature of the cellular interior, its implications for particle mobility and concentration at different length scales remain largely unexplored. In this work, we use agent-based simulations of diffusion to investigate how heterogeneous diffusivity affects the movement and concentration of diffusing particles. We propose that a nonequilibrium mode of membrane-less compartmentalization arising from the convergence of diffusive trajectories into low-diffusive sinks, which we call 'diffusive lensing,' is relevant for living systems. Our work highlights the phenomenon of diffusive lensing as a potentially key driver of mesoscale dynamics in the cytoplasm, with possible far-reaching implications for biochemical processes.

Indexed as

CytoplasmBiological TransportCell CompartmentationComputer SimulationDiffusionModels, Biologicalagent-based modelingcytoplasmic biophysicsdiffusionmolecular dynamicsnonephysics of living systemsspace-dependent diffusivitysubcellular compartmentalization

Identifiers

PMID38896469
PMCPMC11186627

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.