Evidence map›Paper›PMID 38895962›Full record

ArticleProteomics2024

A fast and sensitive size-exclusion chromatography method for plasma extracellular vesicle proteomic analysis.

Ivo Díaz Ludovico, Samantha M Powell, Gina Many, Lisa Bramer, Soumyadeep Sarkar, Kelly Stratton, Tao Liu, Tujin Shi, Wei-Jun Qian, Kristin E Burnum-Johnson and 2 more

Abstract read
In one paragraph

Article in Proteomics, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. Review
  3. Review
  4. Review
  5. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

12 authors.

Ivo Díaz LudovicoBiological Sciences Division, Pacific Northwest National Laboratory, Richland, Washington, USA.ORCID 0000-0002-3475-5191
Samantha M PowellBiological Sciences Division, Pacific Northwest National Laboratory, Richland, Washington, USA.
Gina ManyBiological Sciences Division, Pacific Northwest National Laboratory, Richland, Washington, USA.
Lisa BramerBiological Sciences Division, Pacific Northwest National Laboratory, Richland, Washington, USA.
Soumyadeep SarkarBiological Sciences Division, Pacific Northwest National Laboratory, Richland, Washington, USA.
Kelly StrattonBiological Sciences Division, Pacific Northwest National Laboratory, Richland, Washington, USA.
Tao LiuBiological Sciences Division, Pacific Northwest National Laboratory, Richland, Washington, USA.
Tujin ShiBiological Sciences Division, Pacific Northwest National Laboratory, Richland, Washington, USA.
Wei-Jun QianBiological Sciences Division, Pacific Northwest National Laboratory, Richland, Washington, USA.ORCID 0000-0002-5393-2827
Kristin E Burnum-JohnsonEnvironmental and Molecular Science Division, Pacific Northwest National Laboratory, Richland, Washington, USA.
John T MelchiorBiological Sciences Division, Pacific Northwest National Laboratory, Richland, Washington, USA.
Ernesto S NakayasuBiological Sciences Division, Pacific Northwest National Laboratory, Richland, Washington, USA.ORCID 0000-0002-4056-2695

Funding

Transcriptional Mechanisms Governing Beta Cell DifferentiationR01DK060581 · NIDDK · UNIVERSITY OF VIRGINIA CHARLOTTESVILLE · PI Raghavendra G Mirmira · 2002 to 2026
$8.5M
The Integrated Stress Response in Human Islets During Early T1DU01DK127786 · NIDDK · UNIVERSITY OF CHICAGO · PI EVANS-MOLINA, CARMELLA, MIRMIRA, RAGHAVENDRA G · 2020 to 2025
$7.1M
Alternative RNA splicing events contribute to the onset of islet dysfunction in T1DU01DK127505 · NIDDK · UNIVERSITY OF COLORADO DENVER · PI NAKAYASU, ERNESTO SATOSHI, SUSSEL, LORI · 2020 to 2023
$2.9M
Implications of Changes in Islet Exosomal Cargo in Type 1 DiabetesR01DK133881 · NIDDK · INDIANA UNIVERSITY INDIANAPOLIS · PI EVANS-MOLINA, CARMELLA, MIRMIRA, RAGHAVENDRA G · 2022 to 2025
$2.7M
Beta cell extracellular vesicles in health and diseaseR01DK121929 · NIDDK · INDIANA UNIVERSITY INDIANAPOLIS · PI SIMS, EMILY K · 2020 to 2024
$2.0M
Systematic validation of biomarkers predictive of IA and T1D and their relationship with disease developmentR01DK138335 · NIDDK · BATTELLE PACIFIC NORTHWEST LABORATORIES · PI Thomas O Metz, Ernesto Satoshi Nakayasu · 2024 to 2026
$1.9M
NIDDK NIH HHS R01 DK060581NIDDK NIH HHS R01 DK121929NIDDK NIH HHS R01 DK133881NIDDK NIH HHS R01 DK138335NIDDK NIH HHS U01 DK127505NIDDK NIH HHS U01 DK127786
6 · The paper itself

Abstract

Extracellular vesicles (EVs) carry diverse biomolecules derived from their parental cells, making their components excellent biomarker candidates. However, purifying EVs is a major hurdle in biomarker discovery since current methods require large amounts of samples, are time-consuming and typically have poor reproducibility. Here we describe a simple, fast, and sensitive EV fractionation method using size exclusion chromatography (SEC) on a fast protein liquid chromatography (FPLC) system. Our method uses a Superose 6 Increase 5/150, which has a bed volume of 2.9 mL. The FPLC system and small column size enable reproducible separation of only 50 µL of human plasma in 15 min. To demonstrate the utility of our method, we used longitudinal samples from a group of individuals who underwent intense exercise. A total of 838 proteins were identified, of which, 261 were previously characterized as EV proteins, including classical markers, such as cluster of differentiation (CD)9 and CD81. Quantitative analysis showed low technical variability with correlation coefficients greater than 0.9 between replicates. The analysis captured differences in relevant EV proteins involved in response to physical activity. Our method enables fast and sensitive fractionation of plasma EVs with low variability, which will facilitate biomarker studies in large clinical cohorts.

Indexed as

Chromatography, GelExtracellular VesiclesProteomicsBiomarkersHumansBiomarkersbiomarkerextracellular vesiclesplasmaproteomicssize‐exclusion chromatography

Identifiers

PMID38895962
PMCPMC11610398

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.