Evidence map›Paper›PMID 38895449›Full record

ArticlebioRxiv : the preprint server for biology2024

Decoding chromosome organization using CheC-PLS: chromosome conformation by proximity labeling and long-read sequencing.

Kewei Xu, Yichen Zhang, James Baldwin-Brown, Thomas A Sasani, Nitin Phadnis, Matthew P Miller, Ofer Rog

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

7 authors.

Kewei XuSchool of Biological Sciences, University of Utah.
Yichen ZhangSchool of Biological Sciences, University of Utah.
James Baldwin-BrownSchool of Biological Sciences, University of Utah.
Thomas A SasaniDepartment of Human Genetics, University of Utah.
Nitin PhadnisSchool of Biological Sciences, University of Utah.
Matthew P MillerDepartment of Biochemistry, University of Utah.
Ofer RogSchool of Biological Sciences, University of Utah.ORCID 0000-0001-6558-6194

Funding

Structure and dynamics of meiotic chromosomesR35GM128804 · NIGMS · UTAH STATE HIGHER EDUCATION SYSTEM--UNIVERSITY OF UTAH · PI Ofer Rog · 2018 to 2026
$4.1M
Mechanical activities ensuring accurate chromosome segregationR35GM142749 · NIGMS · UTAH STATE HIGHER EDUCATION SYSTEM--UNIVERSITY OF UTAH · PI Matthew P Miller · 2021 to 2026
$2.4M
NIGMS NIH HHS R35 GM128804NIGMS NIH HHS R35 GM142749
6 · The paper itself

Abstract

Genomic approaches have provided detailed insight into chromosome architecture. However, commonly deployed techniques do not preserve connectivity-based information, leaving large-scale genome organization poorly characterized. Here, we developed CheC-PLS: a proximity-labeling technique that indelibly marks, and then decodes, protein-associated sites. CheC-PLS tethers dam methyltransferase to a protein of interest, followed by Nanopore sequencing to identify methylated bases - indicative of

Identifiers

PMID38895449
PMCPMC11185558

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.