Evidence map›Paper›PMID 38893272›Full record

ArticleCancers2024

Novel Transcriptional and DNA Methylation Abnormalities of SORT1 Gene in Non-Small Cell Lung Cancer.

Amelia Acha-Sagredo, Cornelia M Wilson, Naiara Garcia Bediaga, Helen Kalirai, Michael P A Davies, Sarah E Coupland, John K Field, Triantafillos Liloglou

Abstract read
In one paragraph

Article in Cancers, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Amelia Acha-SagredoInstitute of Systems, Molecular & Integrative Biology, University of Liverpool, Liverpool L69 3BX, UK.
Cornelia M WilsonLife Sciences Industry Liaison Lab, School of Psychology and Life Sciences, Canterbury Christ Church University, Canterbury CT1 1QU, UK.ORCID 0000-0001-6584-6179
Naiara Garcia BediagaAdelaide Centre for Epigenetics, Faculty of Health and Medical Sciences, The University of Adelaide, Adelaide, SA 5005, Australia.
Helen KaliraiInstitute of Life Course and Medical Sciences, University of Liverpool, Liverpool L69 3BX, UK.
Michael P A DaviesInstitute of Systems, Molecular & Integrative Biology, University of Liverpool, Liverpool L69 3BX, UK.ORCID 0000-0002-7609-4977
Sarah E CouplandInstitute of Life Course and Medical Sciences, University of Liverpool, Liverpool L69 3BX, UK.ORCID 0000-0002-1464-2069
John K FieldInstitute of Systems, Molecular & Integrative Biology, University of Liverpool, Liverpool L69 3BX, UK.
Triantafillos LiloglouInstitute of Systems, Molecular & Integrative Biology, University of Liverpool, Liverpool L69 3BX, UK.ORCID 0000-0003-0460-1404

Funding

North West Cancer Research 1065Roy Castle Lung Cancer Foundation Liverpool Lung Project
6 · The paper itself

Abstract

Sortilin is an important regulator with potential tumour-suppressor function by limiting EGFR signalling. In this study, we undertook a comprehensive expression analysis of sortilin transcript variants and the DNA methylation status of their corresponding promoters in human non-small cell carcinomas (NSCLCs). RNA/DNA was extracted from 81 NSCLC samples and paired normal tissue. mRNA expression was measured by qPCR and DNA methylation determined by pyrosequencing. BigDye-terminator sequencing was used to confirm exon-8 alternative splicing. Results demonstrated that both SORT1A and SORT1B variants were downregulated in lung tumours. The SORT1A/SORT1B expression ratio was higher in tumours compared to normal tissue. SORT1B promoter hypermethylation was detected in lung tumours compared to normal lung (median difference 14%, Mann-Whitney test

Indexed as

DNA methylationnon-small cell lung cancersortilinsplicing

Identifiers

PMID38893272
PMCPMC11171784

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.