Evidence Supporting a Role of Alternative Splicing Participates in Melon (

Wenjiao Wang, Yuping Wei, Zhaoying Xu, Chengcheng Shen, Ang Li, Dailu Guan, Xuejun Zhang, Bin Liu

Abstract read

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Article in International journal of molecular sciences, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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4 · The record

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5 · Who and what money

Authors and funding

8 authors.

Wenjiao WangCollege of Horticulture, Shanxi Agricultural University, Jinzhong 030801, China.

Yuping WeiCollege of Horticulture, Shanxi Agricultural University, Jinzhong 030801, China.

Zhaoying XuCollege of Horticulture, Shanxi Agricultural University, Jinzhong 030801, China.

Chengcheng ShenCollege of Horticulture, Shanxi Agricultural University, Jinzhong 030801, China.ORCID 0009-0003-5455-1975

Ang LiCollege of Life Science and Technology, Xinjiang University, Urumqi 830046, China.

Dailu GuanDepartment of Animal Science, University of California Davis, Davis, CA 95616, USA.

Xuejun ZhangHami-Melon Research Center, Xinjiang Academy of Agricultural Sciences, Urumqi 830091, China.

Bin LiuHami-Melon Research Center, Xinjiang Academy of Agricultural Sciences, Urumqi 830091, China.ORCID 0000-0002-0855-0213

Funding

Hainan Province Science and Technology Special Fun ZDYF2024XDNY282National Natural Science Foundation of China 31902029Natural Science Foundation of Shanxi Province 202303021221089Projects of International Cooperation and Exchanges from Department of Science and Technology in Xinjiang 2022E01064the China Agriculture Research System of MOF and MARA CARS-25the Key Research and Development Program of Shanxi Province, China 202102140601013the Key Research and Development Program of Xinjiang Uygur autonomous region, China 2023B02017the Xinjiang Natural Science Foundation for Distinguished Young Scholars 2022D01E60

6 · The paper itself

Abstract

One key post-transcriptional modification mechanism that dynamically controls a number of physiological processes in plants is alternative splicing (AS). However, the functional impacts of AS on fruit ripening remain unclear. In this research, we used RNA-seq data from climacteric (VED, Harukei 3) and non-climacteric (PI, PS) melon cultivars to explore alternative splicing (AS) in immature and mature fruit. The results revealed dramatic changes in differential AS genes (DAG) between the young and mature fruit stages, particularly in genes involved in fruit development/ripening, carotenoid and capsaicinoid biosynthesis, and starch and sucrose metabolism. Serine/arginine-rich (SR) family proteins are known as important splicing factors in AS events. From the melon genome, a total of 17 SR members were discovered in this study. These genes could be classified into eight distinct subfamilies based on gene structure and conserved motifs. Promoter analysis detected various cis-acting regulatory elements involved in hormone pathways and fruit development. Interestingly, these

Indexed as

Alternative SplicingCucumis meloFruitGene Expression Regulation, PlantPlant ProteinsGene Expression ProfilingPlant Proteinsalternative splicingfruit ripeningmelon (Cucumis melo L.)serine/arginine-rich gene family

Identifiers

PMID38892093

DOI10.3390/ijms25115886

PMCPMC11172951

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.