Evidence map›Paper›PMID 38891924›Full record

ArticleInternational journal of molecular sciences2024

Proof of Concept Study: Comparability of Microbiome Diversity in Self- and Physician-Collected HPV-Positive and HPV-Negative Cervicovaginal Samples.

Laura Asensio-Puig, Álvaro de Andrés-Pablo, Olfat Khannous-Lleiffe, Raquel Ibáñez, Amelia Acera, Silvia de Sanjosé, Toni Gabaldón, Laia Alemany, Laia Bruni, Miquel Àngel Pavón

Abstract readComparative Study
In one paragraph

Article in International journal of molecular sciences, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Laura Asensio-PuigCancer Epidemiology Research Programme, Catalan Institute of Oncology-Bellvitge Biomedical Research Institute (IDIBELL), 08908 L'Hospitalet de Llobregat, Spain.ORCID 0000-0003-1772-1923
Álvaro de Andrés-PabloCancer Epidemiology Research Programme, Catalan Institute of Oncology-Bellvitge Biomedical Research Institute (IDIBELL), 08908 L'Hospitalet de Llobregat, Spain.ORCID 0000-0002-0432-5078
Olfat Khannous-LleiffeBarcelona Supercomputing Centre (BSC-CNS), 08034 Barcelona, Spain.
Raquel IbáñezCancer Epidemiology Research Programme, Catalan Institute of Oncology-Bellvitge Biomedical Research Institute (IDIBELL), 08908 L'Hospitalet de Llobregat, Spain.
Amelia AceraAtenció a la Salut Sexual i Reproductiva (ASSIR), SAP Cerdanyola-Ripollet, Institut Català de la Salut, 08291 Ripollet, Spain.
Silvia de SanjoséCentro de Investigación Biomédica en Red de Epidemiología y Salud Pública (CIBERESP CB06/02/0073), 28029 Madrid, Spain.
Toni GabaldónBarcelona Supercomputing Centre (BSC-CNS), 08034 Barcelona, Spain.ORCID 0000-0003-0019-1735
Laia AlemanyCancer Epidemiology Research Programme, Catalan Institute of Oncology-Bellvitge Biomedical Research Institute (IDIBELL), 08908 L'Hospitalet de Llobregat, Spain.
Laia BruniCancer Epidemiology Research Programme, Catalan Institute of Oncology-Bellvitge Biomedical Research Institute (IDIBELL), 08908 L'Hospitalet de Llobregat, Spain.
Miquel Àngel PavónCancer Epidemiology Research Programme, Catalan Institute of Oncology-Bellvitge Biomedical Research Institute (IDIBELL), 08908 L'Hospitalet de Llobregat, Spain.

Funding

Centro de Investigación Biomédica en Red CB06/02/0073Government of Catalonia 2021SGR01029Government of Catalonia 2021SGR1354Government of Spain FPU2020-02907Instituto de Salud Carlos III FI18/00244Instituto de Salud Carlos III PI17/00123
6 · The paper itself

Abstract

Recent studies have revealed the impact of human papillomavirus (HPV) infections on the cervicovaginal microbiome; however, few have explored the utility of self-collected specimens (SCS) for microbiome detection, obtained using standardised methods for HPV testing. Here, we present a proof-of-concept analysis utilising Oxford Nanopore sequencing of the 16S rRNA gene in paired samples collected either by the patient using an Evalyn Brush or collected by a physician using liquid-based cytology (LBC). We found no significant differences in the α-diversity estimates between the SCS and LBC samples. Similarly, when analysing β-diversity, we observed a close grouping of paired samples, indicating that both collection methods detected the same microbiome features. The identification of genera and

Indexed as

Cervix UteriMicrobiotaPapillomavirus InfectionsRNA, Ribosomal, 16SVaginaAdultBacteriaFemaleHumansMiddle AgedPapillomaviridaeProof of Concept StudySpecimen HandlingRNA, Ribosomal, 16S16S rRNAHPV screeningmicrobiomenanopore sequencingself-sampling

Identifiers

PMID38891924
PMCPMC11172023

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.