Evidence map›Paper›PMID 38890644›Full record

ReviewMicrobial cell factories2024

Comprehensive network of stress-induced responses in Zymomonas mobilis during bioethanol production: from physiological and molecular responses to the effects of system metabolic engineering.

Shaqayeq Asefi, Hoda Nouri, Golchehr Pourmohammadi, Hamid Moghimi

Abstract readReview
In one paragraph

Review in Microbial cell factories, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Review
  2. Article
  3. Ethanolphilic lactic acid bacteriumApplied and environmental microbiology · 2025
    Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Shaqayeq AsefiDepartment of Microbial Biotechnology, School of Biology, College of Science, University of Tehran, Tehran, Iran.
Hoda NouriDepartment of Microbial Biotechnology, School of Biology, College of Science, University of Tehran, Tehran, Iran. hoda.nouri@yahoo.com.ORCID http://orcid.org/0000-0003-1464-8919
Golchehr PourmohammadiDepartment of Microbial Biotechnology, School of Biology, College of Science, University of Tehran, Tehran, Iran.
Hamid MoghimiDepartment of Microbial Biotechnology, School of Biology, College of Science, University of Tehran, Tehran, Iran. hmoghimi@ut.ac.ir.ORCID http://orcid.org/0000-0002-9454-7474

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Nowadays, biofuels, especially bioethanol, are becoming increasingly popular as an alternative to fossil fuels. Zymomonas mobilis is a desirable species for bioethanol production due to its unique characteristics, such as low biomass production and high-rate glucose metabolism. However, several factors can interfere with the fermentation process and hinder microbial activity, including lignocellulosic hydrolysate inhibitors, high temperatures, an osmotic environment, and high ethanol concentration. Overcoming these limitations is critical for effective bioethanol production. In this review, the stress response mechanisms of Z. mobilis are discussed in comparison to other ethanol-producing microbes. The mechanism of stress response is divided into physiological (changes in growth, metabolism, intracellular components, and cell membrane structures) and molecular (up and down-regulation of specific genes and elements of the regulatory system and their role in expression of specific proteins and control of metabolic fluxes) changes. Systemic metabolic engineering approaches, such as gene manipulation, overexpression, and silencing, are successful methods for building new metabolic pathways. Therefore, this review discusses systems metabolic engineering in conjunction with systems biology and synthetic biology as an important method for developing new strains with an effective response mechanism to fermentation stresses during bioethanol production. Overall, understanding the stress response mechanisms of Z. mobilis can lead to more efficient and effective bioethanol production.

Indexed as

BiofuelsEthanolFermentationMetabolic EngineeringStress, PhysiologicalZymomonasBiofuelsEthanolBioethanol fermentation stress conditionMetabolic engineeringStress response regulatory networkSynthetic biologySystems biologyZymomonas mobilis

Identifiers

PMID38890644
PMCPMC11186258

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.