Evidence map›Paper›PMID 38890427›Full record

ArticleNature methods2024

Permittivity tensor imaging: modular label-free imaging of 3D dry mass and 3D orientation at high resolution.

Li-Hao Yeh, Ivan E Ivanov, Talon Chandler, Janie R Byrum, Bryant B Chhun, Syuan-Ming Guo, Cameron Foltz, Ezzat Hashemi, Juan A Perez-Bermejo, Huijun Wang and 5 more

Abstract read
In one paragraph

Article in Nature methods, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

Li-Hao YehChan Zuckerberg Biohub, San Francisco, CA, USA.ORCID http://orcid.org/0000-0003-2803-5996
Ivan E IvanovChan Zuckerberg Biohub, San Francisco, CA, USA.ORCID http://orcid.org/0000-0001-6389-0213
Talon ChandlerChan Zuckerberg Biohub, San Francisco, CA, USA.
Janie R ByrumChan Zuckerberg Biohub, San Francisco, CA, USA.
Bryant B ChhunChan Zuckerberg Biohub, San Francisco, CA, USA.
Syuan-Ming GuoChan Zuckerberg Biohub, San Francisco, CA, USA.
Cameron FoltzChan Zuckerberg Biohub, San Francisco, CA, USA.ORCID http://orcid.org/0000-0001-8933-2172
Ezzat HashemiStanford University, Palo Alto, CA, USA.
Juan A Perez-BermejoGladstone Institutes, San Francisco, CA, USA.ORCID http://orcid.org/0000-0001-7625-358X
Huijun WangUniversity of Southampton, Southampton, UK.
Yanhao YuUniversity of Southampton, Southampton, UK.
Peter G KazanskyUniversity of Southampton, Southampton, UK.
Bruce R ConklinGladstone Institutes, San Francisco, CA, USA.ORCID http://orcid.org/0000-0003-1463-6061
May H HanStanford University, Palo Alto, CA, USA.
Shalin B MehtaChan Zuckerberg Biohub, San Francisco, CA, USA. shalin.mehta@czbiohub.org.ORCID http://orcid.org/0000-0002-2542-3582

Funding

Project 3: Control of cardiac transcription by MEF2 and myocardinP01HL146366 · NHLBI · J. DAVID GLADSTONE INSTITUTES · PI SRIVASTAVA, DEEPAK · 2019 to 2023
$13.7M
Identifying Therapeutic Targets for RNA Splicing-Related CardiomyopathyR01HL130533 · NHLBI · J. DAVID GLADSTONE INSTITUTES · PI CONKLIN, BRUCE R · 2016 to 2019
$1.8M
NHLBI NIH HHS P01 HL146366NHLBI NIH HHS R01 HL130533
6 · The paper itself

Abstract

The dry mass and the orientation of biomolecules can be imaged without a label by measuring their permittivity tensor (PT), which describes how biomolecules affect the phase and polarization of light. Three-dimensional (3D) imaging of PT has been challenging. We present a label-free computational microscopy technique, PT imaging (PTI), for the 3D measurement of PT. PTI encodes the invisible PT into images using oblique illumination, polarization-sensitive detection and volumetric sampling. PT is decoded from the data with a vectorial imaging model and a multi-channel inverse algorithm, assuming uniaxial symmetry in each voxel. We demonstrate high-resolution imaging of PT of isotropic beads, anisotropic glass targets, mouse brain tissue, infected cells and histology slides. PTI outperforms previous label-free imaging techniques such as vector tomography, ptychography and light-field imaging in resolving the 3D orientation and symmetry of organelles, cells and tissue. We provide open-source software and modular hardware to enable the adoption of the method.

Indexed as

AlgorithmsImaging, Three-DimensionalAnimalsBrainHumansImage Processing, Computer-AssistedMiceMicroscopySoftware

Identifiers

PMID38890427
PMCPMC11239526

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.