Evidence map›Paper›PMID 38890328›Full record

ArticleScientific reports2024

Integrated transcriptome and metabolomics analyses revealed key functional genes in Canna indica under Cr stress.

Sixi Zhu, Wei Zhao, Luying Sheng, Xiuqin Yang, Huan Mao, Suxia Sun, Zhongbing Chen

Abstract read
In one paragraph

Article in Scientific reports, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Endophytic Colonization ofInternational journal of molecular sciences · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Sixi ZhuCollege of Eco-Environment Engineering, The Karst Environmental Geological Hazard Prevention of Key Laboratory of State Ethnic Affairs Commission, Guizhou Minzu University, Guiyang, 550025, China. zhusixi2011@163.com.
Wei ZhaoCollege of Eco-Environment Engineering, The Karst Environmental Geological Hazard Prevention of Key Laboratory of State Ethnic Affairs Commission, Guizhou Minzu University, Guiyang, 550025, China.
Luying ShengCollege of Eco-Environment Engineering, The Karst Environmental Geological Hazard Prevention of Key Laboratory of State Ethnic Affairs Commission, Guizhou Minzu University, Guiyang, 550025, China.
Xiuqin YangCollege of Eco-Environment Engineering, The Karst Environmental Geological Hazard Prevention of Key Laboratory of State Ethnic Affairs Commission, Guizhou Minzu University, Guiyang, 550025, China.
Huan MaoCollege of Eco-Environment Engineering, The Karst Environmental Geological Hazard Prevention of Key Laboratory of State Ethnic Affairs Commission, Guizhou Minzu University, Guiyang, 550025, China.
Suxia SunCollege of Eco-Environment Engineering, The Karst Environmental Geological Hazard Prevention of Key Laboratory of State Ethnic Affairs Commission, Guizhou Minzu University, Guiyang, 550025, China.
Zhongbing ChenDepartment of Applied Ecology, Faculty of Environmental Sciences, Czech University of Life Sciences Prague, Kamýcka 129, Praha-Suchdol, 16500, Czech Republic.

Funding

2024 Guizhou Basic Research Plan (Natural Science) project, China 202442924814811233the National Natural Science Foundation of China 31560107
6 · The paper itself

Abstract

Chromium (Cr) can interfere with plant gene expression, change the content of metabolites and affect plant growth. However, the molecular response mechanism of wetland plants at different time sequences under Cr stress has yet to be fully understood. In this study, Canna indica was exposed to 100 mg/kg Cr-contaminated soil for 0, 7, 14, and 21 days and analyzed using untargeted metabolomics (LC-MS) and transcriptomics. The results showed that Cr stress increased the activities of superoxide dismutase (SOD), ascorbate peroxidase (APX) and peroxidase (POD), the contents of glutathione (GSH), malondialdehyde (MDA), and oxygen free radical (ROS), and inhibited the biosynthesis of photosynthetic pigments, thus leading to changes in plant growth and biomass. Metabonomics analysis showed that Cr stress mainly affected 12 metabolic pathways, involving 38 differentially expressed metabolites, including amino acids, phenylpropane, and flavonoids. By transcriptome analysis, a total of 16,247 differentially expressed genes (DEGs, 7710 up-regulated genes, and 8537 down-regulated genes) were identified, among which, at the early stage of stress (Cr contaminate seven days), C. indica responds to Cr toxicity mainly through galactose, starch and sucrose metabolism. With the extension of stress time, plant hormone signal transduction and MAPK signaling pathway in C. indica in the Cr14 (Cr contaminate 14 days) treatment group were significantly affected. Finally, in the late stage of stress (Cr21), C. indica co-defuses Cr toxicity by activating its Glutathione metabolism and Phenylpropanoid biosynthesis. In conclusion, this study revealed the molecular response mechanism of C. indica to Cr stress at different times through multi-omics methods.

Indexed as

Gene Expression ProfilingGene Expression Regulation, PlantMetabolomicsStress, PhysiologicalTranscriptomeChromiumMetabolomeSoil PollutantsChromiumSoil PollutantsCanna indicaChromiumMetabolomePhysiologyTranscriptome

Identifiers

PMID38890328
PMCPMC11189463

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