Evidence map›Paper›PMID 38890325›Full record

ArticleNature communications2024

Epistasis mediates the evolution of the receptor binding mode in recent human H3N2 hemagglutinin.

Ruipeng Lei, Weiwen Liang, Wenhao O Ouyang, Andrea Hernandez Garcia, Chika Kikuchi, Shengyang Wang, Ryan McBride, Timothy J C Tan, Yuanxin Sun, Chunke Chen and 9 more

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed.

  1. Article
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  5. Article
  6. Learning a viral protein's vocabulary.Nature ecology & evolution · 2026
    Article
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  8. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors.

Ruipeng Lei *Department of Biochemistry, University of Illinois Urbana-Champaign, Urbana, IL, 61801, USA.ORCID http://orcid.org/0000-0002-4652-3400
Weiwen Liang *HKU-Pasteur Research Pole, School of Public Health, Li Ka Shing Faculty of Medicine, The University of Hong Kong, Hong Kong SAR, China.ORCID http://orcid.org/0000-0001-5213-0331
Wenhao O Ouyang *Department of Biochemistry, University of Illinois Urbana-Champaign, Urbana, IL, 61801, USA.
Andrea Hernandez Garcia *Department of Biochemistry, University of Illinois Urbana-Champaign, Urbana, IL, 61801, USA.
Chika KikuchiDepartment of Molecular Medicine, The Scripps Research Institute, La Jolla, CA, 92037, USA.ORCID http://orcid.org/0000-0002-7609-4125
Shengyang WangDepartment of Molecular Medicine, The Scripps Research Institute, La Jolla, CA, 92037, USA.
Ryan McBrideDepartment of Molecular Medicine, The Scripps Research Institute, La Jolla, CA, 92037, USA.
Timothy J C TanCenter for Biophysics and Quantitative Biology, University of Illinois Urbana-Champaign, Urbana, IL, 61801, USA.ORCID http://orcid.org/0000-0001-5337-5357
Yuanxin SunThe Jockey Club School of Public Health and Primary Care, Faculty of Medicine, The Chinese University of Hong Kong, Hong Kong SAR, China.
Chunke ChenThe Jockey Club School of Public Health and Primary Care, Faculty of Medicine, The Chinese University of Hong Kong, Hong Kong SAR, China.
Claire S GrahamDepartment of Biochemistry, University of Illinois Urbana-Champaign, Urbana, IL, 61801, USA.
Lucia A RodriguezDepartment of Biochemistry, University of Illinois Urbana-Champaign, Urbana, IL, 61801, USA.ORCID http://orcid.org/0009-0006-2872-4045
Ivana R ShenDepartment of Biochemistry, University of Illinois Urbana-Champaign, Urbana, IL, 61801, USA.
Danbi ChoiDepartment of Biochemistry, University of Illinois Urbana-Champaign, Urbana, IL, 61801, USA.
Roberto BruzzoneHKU-Pasteur Research Pole, School of Public Health, Li Ka Shing Faculty of Medicine, The University of Hong Kong, Hong Kong SAR, China.
James C PaulsonDepartment of Molecular Medicine, The Scripps Research Institute, La Jolla, CA, 92037, USA.ORCID http://orcid.org/0000-0003-4589-5322
Satish K NairDepartment of Biochemistry, University of Illinois Urbana-Champaign, Urbana, IL, 61801, USA.ORCID http://orcid.org/0000-0003-1790-1334
Chris K P MokThe Jockey Club School of Public Health and Primary Care, Faculty of Medicine, The Chinese University of Hong Kong, Hong Kong SAR, China. kapunmok@cuhk.edu.hk.ORCID http://orcid.org/0000-0002-0525-6772
Nicholas C WuDepartment of Biochemistry, University of Illinois Urbana-Champaign, Urbana, IL, 61801, USA. nicwu@illinois.edu.ORCID http://orcid.org/0000-0002-9078-6697

Funding

Influenza virus receptors on human airway epithelial cellsR01AI114730 · NIAID · SCRIPPS RESEARCH INSTITUTE, THE · PI PAULSON, JAMES C · 2015 to 2023
$5.1M
Structure, Function, and Engineering of RiPP Biosynthetic EnzymesR35GM151874 · NIGMS · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI Satish K Nair · 2024 to 2026
$1.8M
NIAID NIH HHS R01 AI114730NIGMS NIH HHS R35 GM151874
6 · The paper itself

Abstract

The receptor-binding site of influenza A virus hemagglutinin partially overlaps with major antigenic sites and constantly evolves. In this study, we observe that mutations G186D and D190N in the hemagglutinin receptor-binding site have coevolved in two recent human H3N2 clades. X-ray crystallography results show that these mutations coordinately drive the evolution of the hemagglutinin receptor binding mode. Epistasis between G186D and D190N is further demonstrated by glycan binding and thermostability analyses. Immunization and neutralization experiments using mouse and human samples indicate that the evolution of receptor binding mode is accompanied by a change in antigenicity. Besides, combinatorial mutagenesis reveals that G186D and D190N, along with other natural mutations in recent H3N2 strains, alter the compatibility with a common egg-adaptive mutation in seasonal influenza vaccines. Overall, our findings elucidate the role of epistasis in shaping the recent evolution of human H3N2 hemagglutinin and substantiate the high evolvability of its receptor-binding mode.

Indexed as

Epistasis, GeneticEvolution, MolecularHemagglutinin Glycoproteins, Influenza VirusInfluenza A Virus, H3N2 SubtypeInfluenza, HumanAnimalsBinding SitesCrystallography, X-RayFemaleHumansInfluenza VaccinesMiceMutationProtein BindingReceptors, VirusHemagglutinin Glycoproteins, Influenza VirusInfluenza VaccinesReceptors, Virus

Identifiers

PMID38890325
PMCPMC11189414

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.