Evidence map›Paper›PMID 38890299›Full record

ArticleNature communications2024

High resolution long-read telomere sequencing reveals dynamic mechanisms in aging and cancer.

Tobias T Schmidt, Carly Tyer, Preeyesh Rughani, Candy Haggblom, Jeffrey R Jones, Xiaoguang Dai, Kelly A Frazer, Fred H Gage, Sissel Juul, Scott Hickey and 1 more

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 46 papers.

0numbers the graph read from it
0cells of the map it votes in
46citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

46 citing papers in PubMed.

  1. How telomere attrition protects against cancer.Nature reviews. Genetics · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Tobias T Schmidt *Salk Institute for Biological Studies, La Jolla, CA, 92037, USA.
Carly Tyer *Oxford Nanopore Technologies, Inc., New York, NY, USA.
Preeyesh Rughani *Oxford Nanopore Technologies, Inc., New York, NY, USA.
Candy HaggblomSalk Institute for Biological Studies, La Jolla, CA, 92037, USA.
Jeffrey R JonesSalk Institute for Biological Studies, La Jolla, CA, 92037, USA.ORCID http://orcid.org/0000-0002-7570-2571
Xiaoguang DaiOxford Nanopore Technologies, Inc., New York, NY, USA.
Kelly A FrazerInstitute of Genomic Medicine, University of California, San Diego, La Jolla, CA, 92093-0761, USA.
Fred H GageSalk Institute for Biological Studies, La Jolla, CA, 92037, USA.ORCID http://orcid.org/0000-0002-0938-4106
Sissel JuulOxford Nanopore Technologies, Inc., New York, NY, USA.ORCID http://orcid.org/0000-0002-0315-4449
Scott HickeyOxford Nanopore Technologies, Inc., New York, NY, USA. scott.hickey@nanoporetech.com.ORCID http://orcid.org/0009-0009-0785-677X
Jan KarlsederSalk Institute for Biological Studies, La Jolla, CA, 92037, USA. karlseder@salk.edu.ORCID http://orcid.org/0000-0001-7433-9750

Funding

Viral Vector Core (VVC)P30CA014195 · NCI · SALK INSTITUTE FOR BIOLOGICAL STUDIES · PI Reuben Shaw · 1985 to 2026
$82.8M
UCSD Shiley-Marcos Alzheimer's Disease Research Center P30P30AG062429 · NIA · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI Mark W Bondi · 2019 to 2026
$34.9M
San Diego Nathan Shock CenterP30AG068635 · NIA · SALK INSTITUTE FOR BIOLOGICAL STUDIES · PI SHADEL, GERALD · 2020 to 2024
$6.0M
Understanding the role of autophagy-regulated cell death in the escape from replicative crisisR01CA234047 · NCI · SALK INSTITUTE FOR BIOLOGICAL STUDIES · PI KARLSEDER, JAN, SHAW, REUBEN · 2020 to 2024
$3.1M
A nucleus-to-mitochondria nucleic acid-sensing pathway prevents bypass of age-associated proliferative boundariesR01AG077324 · NIA · SALK INSTITUTE FOR BIOLOGICAL STUDIES · PI Jan Karlseder · 2022 to 2026
$3.0M
Understanding DNA break repair pathway choice regulation by the cNHEJ inhibitor CYRENR01CA227934 · NCI · SALK INSTITUTE FOR BIOLOGICAL STUDIES · PI KARLSEDER, JAN · 2018 to 2022
$2.2M
Spontaneous replication fork collapse regulates telomere length homeostasis in wild type yeastR01GM142173 · NIGMS · SALK INSTITUTE FOR BIOLOGICAL STUDIES · PI KARLSEDER, JAN · 2021 to 2024
$1.5M
American Heart Association (American Heart Association, Inc.) 19PABH134610000European Molecular Biology Organization (EMBO) ALTF 668-2019NCI NIH HHS P30 CA014195NCI NIH HHS R01 CA227934NCI NIH HHS R01 CA234047NIA NIH HHS P30 AG062429NIA NIH HHS P30 AG068635NIA NIH HHS R01 AG077324NIGMS NIH HHS R01 GM142173U.S. Department of Health & Human Services | NIH | National Cancer Institute (NCI) CA227934U.S. Department of Health & Human Services | NIH | National Cancer Institute (NCI) CA234047U.S. Department of Health & Human Services | NIH | National Cancer Institute (NCI) P30CA014195U.S. Department of Health & Human Services | NIH | National Institute of General Medical Sciences (NIGMS) GM142173U.S. Department of Health & Human Services | NIH | National Institute on Aging (U.S. National Institute on Aging) AG0773424
6 · The paper itself

Abstract

Telomeres are the protective nucleoprotein structures at the end of linear eukaryotic chromosomes. Telomeres' repetitive nature and length have traditionally challenged the precise assessment of the composition and length of individual human telomeres. Here, we present Telo-seq to resolve bulk, chromosome arm-specific and allele-specific human telomere lengths using Oxford Nanopore Technologies' native long-read sequencing. Telo-seq resolves telomere shortening in five population doubling increments and reveals intrasample, chromosome arm-specific, allele-specific telomere length heterogeneity. Telo-seq can reliably discriminate between telomerase- and ALT-positive cancer cell lines. Thus, Telo-seq is a tool to study telomere biology during development, aging, and cancer at unprecedented resolution.

Indexed as

AgingNeoplasmsTelomereAllelesCell Line, TumorHigh-Throughput Nucleotide SequencingHumansSequence Analysis, DNATelomeraseTelomere ShorteningTelomerase

Identifiers

PMID38890299
PMCPMC11189484

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.