Evidence map›Paper›PMID 38888515›Full record

ArticleAging2024

Identification of a signature of histone modifiers in kidney renal clear cell carcinoma.

Yongming Huang, Zhongsheng Yang, Ying Tang, Hua Chen, Tairong Liu, Guanghua Peng, Xin Huang, Xiaolong He, Ming Mei, Chuance Du

Abstract read
In one paragraph

Article in Aging, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Yongming HuangDepartment of Urology, Ganzhou People's Hospital, Ganzhou, Jiangxi 341000, China.
Zhongsheng YangDepartment of Urology, Ganzhou People's Hospital, Ganzhou, Jiangxi 341000, China.
Ying TangDepartment of Day Ward, The First Affiliated Hospital, Jiangxi Medical College, Nanchang University, Nanchang, Jiangxi 330006, China.
Hua ChenDepartment of Urology, Ganzhou People's Hospital, Ganzhou, Jiangxi 341000, China.
Tairong LiuDepartment of Urology, Ganzhou People's Hospital, Ganzhou, Jiangxi 341000, China.
Guanghua PengDepartment of Urology, Ganzhou People's Hospital, Ganzhou, Jiangxi 341000, China.
Xin HuangDepartment of Urology, Ganzhou People's Hospital, Ganzhou, Jiangxi 341000, China.
Xiaolong HeDepartment of Urology, Ganzhou People's Hospital, Ganzhou, Jiangxi 341000, China.
Ming MeiDepartment of Day Ward, The First Affiliated Hospital, Jiangxi Medical College, Nanchang University, Nanchang, Jiangxi 330006, China.
Chuance DuDepartment of Urology, Ganzhou People's Hospital, Ganzhou, Jiangxi 341000, China.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Kidney renal clear cell carcinoma (KIRC) is a cancer that is closely associated with epigenetic alterations, and histone modifiers (HMs) are closely related to epigenetic regulation. Therefore, this study aimed to comprehensively explore the function and prognostic value of HMs-based signature in KIRC. HMs were first obtained from top journal. Then, the mRNA expression profiles and clinical information in KIRC samples were downloaded from The Cancer Genome Atlas (TCGA) database and Gene Expression Omnibus (GEO) datasets. Cox regression analysis and least absolute shrinkage and selection operator (Lasso) analysis were implemented to find prognosis-related HMs and construct a risk model related to the prognosis in KIRC. Kaplan-Meier analysis was used to determine prognostic differences between high- and low-risk groups. Immune infiltration and drug sensitivity analysis were also performed between high- and low-risk groups. Eventually, 8 HMs were successfully identified for the construction of a risk model in KIRC. The results of the correlation analysis between risk signature and the prognosis showed HMs-based signature has good prognostic value in KIRC. Results of immune analysis of risk models showed there were significant differences in the level of immune cell infiltration and expression of immune checkpoints between high- and low-risk groups. The results of the drug sensitivity analysis showed that the high-risk group was more sensitive to several chemotherapeutic agents such as Sunitinib, Tipifarnib, Nilotinib and Bosutinib than the low-risk group. In conclusion, we successfully constructed HMs-based prognostic signature that can predict the prognosis of KIRC.

Indexed as

Carcinoma, Renal CellKidney NeoplasmsBiomarkers, TumorEpigenesis, GeneticGene Expression ProfilingGene Expression Regulation, NeoplasticHistonesHumansPrognosisTranscriptomeBiomarkers, TumorHistoneshistone modifierskidney renal clear cell carcinomaprognosisrisk score

Identifiers

PMID38888515
PMCPMC11236308

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.