Evidence map›Paper›PMID 38887667›Full record

ArticlePlant direct2024

Genome wide association studies on seven yield-related traits of 183 rice varieties in Bangladesh.

Nilanjan Roy, Acramul Haque Kabir, Nourin Zahan, Shahba Tasmiya Mouna, Sakshar Chakravarty, Atif Hasan Rahman, Md Shamsuzzoha Bayzid

Abstract read
In one paragraph

Article in Plant direct, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

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2 · The registry

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3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Identification of a Rice Leaf Width GeneInternational journal of molecular sciences · 2023
    Article
4 · The record

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5 · Who and what money

Authors and funding

7 authors.

Nilanjan RoyDepartment of Biomedical Engineering Military Institute of Science and Technology Dhaka Bangladesh.
Acramul Haque KabirDepartment of Biomedical Engineering Military Institute of Science and Technology Dhaka Bangladesh.ORCID https://orcid.org/0000-0002-4899-5786
Nourin ZahanDepartment of Biomedical Engineering Military Institute of Science and Technology Dhaka Bangladesh.
Shahba Tasmiya MounaDepartment of Biomedical Engineering Military Institute of Science and Technology Dhaka Bangladesh.
Sakshar ChakravartyDepartment of Computer Science and Engineering Bangladesh University of Engineering and Technology Dhaka Bangladesh.ORCID https://orcid.org/0009-0002-6002-5229
Atif Hasan RahmanDepartment of Computer Science and Engineering Bangladesh University of Engineering and Technology Dhaka Bangladesh.
Md Shamsuzzoha BayzidDepartment of Computer Science and Engineering Bangladesh University of Engineering and Technology Dhaka Bangladesh.ORCID https://orcid.org/0000-0002-5640-0615

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Rice genetic diversity is regulated by multiple genes and is largely dependent on various environmental factors. Uncovering the genetic variations associated with the diversity in rice populations is the key to breed stable and high yielding rice varieties. We performed genome wide association studies (GWASs) on seven rice yielding traits (grain length, grain width, grain weight, panicle length, leaf length, leaf width, and leaf angle) based on a population of 183 rice landraces of Bangladesh. Our GWASs reveal various chromosomal regions and candidate genes that are associated with different traits in Bangladeshi rice varieties. Noteworthy was the recurrent implication of chromosome 10 in all three grain-shape-related traits (grain length, grain width, and grain weight), indicating its pivotal role in shaping rice grain morphology. Our study also underscores the involvement of transposon gene families across these three traits. For leaf related traits, chromosome 10 was found to harbor regions that are significantly associated with leaf length and leaf width. The results of these association studies support previous findings as well as provide additional insights into the genetic diversity of rice. This is the first known GWAS study on various yield-related traits in the varieties of

Indexed as

genome wide association studies (GWAS)ricesingle nucleotide polymorphism (SNP)yield‐related traits

Identifiers

PMID38887667
PMCPMC11182691

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.