Evidence map›Paper›PMID 38886582›Full record

ArticleThe EMBO journal2024

The SMC5/6 complex prevents genotoxicity upon APOBEC3A-mediated replication stress.

Dylan F Fingerman, David R O'Leary, Ava R Hansen, Thi Tran, Brooke R Harris, Rachel A DeWeerd, Katharina E Hayer, Jiayi Fan, Emily Chen, Mithila Tennakoon and 10 more

Abstract read
In one paragraph

Article in The EMBO journal, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Allelic Analysis ofInternational journal of molecular sciences · 2026
    Article
  5. Article
  6. Article
  7. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

20 authors.

Dylan F Fingerman *Department of Pediatrics, Washington University School of Medicine, St. Louis, MO, USA.
David R O'Leary *Department of Pediatrics, Washington University School of Medicine, St. Louis, MO, USA.ORCID http://orcid.org/0000-0002-5757-5150
Ava R Hansen *Department of Pediatrics, Washington University School of Medicine, St. Louis, MO, USA.
Thi TranDepartment of Pediatrics, Washington University School of Medicine, St. Louis, MO, USA.
Brooke R HarrisDepartment of Pediatrics, Washington University School of Medicine, St. Louis, MO, USA.
Rachel A DeWeerdDepartment of Pediatrics, Washington University School of Medicine, St. Louis, MO, USA.ORCID http://orcid.org/0000-0001-9309-113X
Katharina E HayerDivision of Cancer Pathobiology, Children's Hospital of Philadelphia, Philadelphia, PA, USA.ORCID http://orcid.org/0000-0002-1463-3111
Jiayi FanMolecular Biology Program, Memorial Sloan-Kettering Cancer Center, New York, NY, USA.
Emily ChenMolecular Biology Program, Memorial Sloan-Kettering Cancer Center, New York, NY, USA.ORCID http://orcid.org/0009-0000-2791-3959
Mithila TennakoonCenter for Genome Integrity, Siteman Cancer Center, Washington University School of Medicine, St. Louis, MO, USA.ORCID http://orcid.org/0000-0002-8472-6882
Alice MeroniCenter for Genome Integrity, Siteman Cancer Center, Washington University School of Medicine, St. Louis, MO, USA.
Julia H SzetoDivision of Cancer Pathobiology, Children's Hospital of Philadelphia, Philadelphia, PA, USA.
Jessica DevenportDepartment of Pediatrics, Washington University School of Medicine, St. Louis, MO, USA.
Danielle LaVigneDepartment of Pediatrics, Washington University School of Medicine, St. Louis, MO, USA.
Matthew D WeitzmanDivision of Cancer Pathobiology, Children's Hospital of Philadelphia, Philadelphia, PA, USA.ORCID http://orcid.org/0000-0001-9713-167X
Ophir ShalemDepartment of Genetics, University of Pennsylvania Perelman School of Medicine, Philadelphia, PA, USA.ORCID http://orcid.org/0000-0002-2267-0801
Jeffrey BednarskiDepartment of Pediatrics, Washington University School of Medicine, St. Louis, MO, USA.ORCID http://orcid.org/0000-0001-6902-0876
Alessandro VindigniCenter for Genome Integrity, Siteman Cancer Center, Washington University School of Medicine, St. Louis, MO, USA.ORCID http://orcid.org/0000-0002-0568-5067
Xiaolan ZhaoMolecular Biology Program, Memorial Sloan-Kettering Cancer Center, New York, NY, USA.
Abby M GreenDepartment of Pediatrics, Washington University School of Medicine, St. Louis, MO, USA. abby.green@wustl.edu.ORCID http://orcid.org/0000-0002-6436-2217

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI SELWYN M VICKERS · 1985 to 2026
$347.4M
PRE-AND POSTGRADUATE TRAINING IN MOLECULAR HEMATOLOGYT32HL007088 · NHLBI · WASHINGTON UNIVERSITY · PI Grant Anthony Challen, Stephen Oh · 1985 to 2026
$14.1M
Mechanisms of replication fork protection and recoveryR01CA248526 · NCI · WASHINGTON UNIVERSITY · PI Alessandro Vindigni, Lee Zou · 2020 to 2026
$3.6M
Regulation of genome replication, recombination, and stress responseR35GM145260 · NIGMS · SLOAN-KETTERING INST CAN RESEARCH · PI Xiaolan Zhao · 2022 to 2026
$3.6M
Dignity Therapy RCT led by Nurses or Chaplains for Elderly Cancer OutpatientsR01CA200867 · NCI · UNIVERSITY OF FLORIDA · PI EMANUEL, LINDA LEAH, FITCHETT, GEORGE · 2016 to 2020
$3.2M
Replication fork repriming versus reversalR01CA237263 · NCI · WASHINGTON UNIVERSITY · PI Alessandro Vindigni · 2019 to 2026
$3.0M
Molecular Interactions of APOBEC3 Enzymes with the Cancer GenomeK08CA212299 · NCI · WASHINGTON UNIVERSITY · PI GREEN, ABBY MARGARET · 2016 to 2020
$744k
Dissecting the mechanisms that underlie mislocalization and aggregation of RNA binding proteins in neurodegenerative diseasesR03NS111447 · NINDS · CHILDREN'S HOSP OF PHILADELPHIA · PI SHALEM, OPHIR · 2019 to 2019
$352k
HHS | National Institutes of Health (NIH) R01CA237263HHS | National Institutes of Health (NIH) R01CA248526NCI NIH HHS K08 CA212299NCI NIH HHS P30 CA008748NCI NIH HHS R01 CA200867NCI NIH HHS R01 CA237263NCI NIH HHS R01 CA248526NHLBI NIH HHS T32 HL007088NIGMS NIH HHS R35 GM145260NINDS NIH HHS R03 NS111447U.S. Department of Defense (DOD) CA200867
6 · The paper itself

Abstract

Mutational patterns caused by APOBEC3 cytidine deaminase activity are evident throughout human cancer genomes. In particular, the APOBEC3A family member is a potent genotoxin that causes substantial DNA damage in experimental systems and human tumors. However, the mechanisms that ensure genome stability in cells with active APOBEC3A are unknown. Through an unbiased genome-wide screen, we define the Structural Maintenance of Chromosomes 5/6 (SMC5/6) complex as essential for cell viability when APOBEC3A is active. We observe an absence of APOBEC3A mutagenesis in human tumors with SMC5/6 dysfunction, consistent with synthetic lethality. Cancer cells depleted of SMC5/6 incur substantial genome damage from APOBEC3A activity during DNA replication. Further, APOBEC3A activity results in replication tract lengthening which is dependent on PrimPol, consistent with re-initiation of DNA synthesis downstream of APOBEC3A-induced lesions. Loss of SMC5/6 abrogates elongated replication tracts and increases DNA breaks upon APOBEC3A activity. Our findings indicate that replication fork lengthening reflects a DNA damage response to APOBEC3A activity that promotes genome stability in an SMC5/6-dependent manner. Therefore, SMC5/6 presents a potential therapeutic vulnerability in tumors with active APOBEC3A.

Indexed as

Cell Cycle ProteinsChromosomal Proteins, Non-HistoneCytidine DeaminaseDNA DamageDNA ReplicationCell Line, TumorGenomic InstabilityHumansProteinsAPOBEC3A protein, humanCell Cycle ProteinsChromosomal Proteins, Non-HistoneCytidine DeaminaseProteinsSMC5 protein, humanSMC6 protein, humanCancer MutagenesisCytidine DeaminaseGenome IntegrityMutational SignaturesReplication Stress

Identifiers

PMID38886582
PMCPMC11294446

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.